Gene
Gene Model ID | pfu_aug1.0_4962.1_67111 |
---|---|
Locus | scaffold4962.1 : 25071 ... 35195 : - |
To GenomeBrowser | scaffold4962.1:25071..35195 |
Genes list of scaffold | scaffold4962.1 |
Synonym | pfu_aug2.0_39.1_30039 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4962.1_67111.t1 | 1 | 1 | ATP-synt_ab_N | 69 | 115 | 9.2e-06 | 25.7 | 1.1e-08 | 3.2e-05 | 24.0 |
pfu_aug1.0_4962.1_67111.t1 | 1 | 1 | ATP-synt_ab | 133 | 357 | 0.0 | 242.9 | 0.0 | 0.0 | 242.4 |
pfu_aug1.0_4962.1_67111.t1 | 1 | 1 | ATP-synt_ab_C | 369 | 418 | 1.2e-16 | 61.1 | 1.1e-19 | 3.2e-16 | 59.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4962.1_67111.t1 | gi|116008297|gb|ABJ51956.1| | mitochondrial H+ ATPase a subunit [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 1 |
mantleEdge | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_4962.1_67111.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4962.1_67111.t1 atgctttcggccagattagcagcaagtctcgtaagacagcttcccagggctgcaccaaaggtttgccaacatgccctggg agctggacttatttctgccaaaaagttttccacatctacacatcaccatgctgcaggagctagtgcggaagtgtcatcca tcttggaggagaggattttgggacagacaacacaagctggattagaggaaaccggtcgtgtactatccatcggagacggt attgctcgtgtttatggtctaaagaatattcaggcagaagaaatggtagaattctccagtggtttaaagggaccaatcac atcacctgacagacagagggtaggagttaaggcccctggtatcatcccccgtatctcagtaaaggaacctatgcagaccg gtattaaggctgtagatagcttagtacctattggtagaggtcagagagaactcatcattggtgacaggcagactggcaaa accgctattgcaattgacacaattattaaccagaagaggttcaacgatggaacaaatgagaaggccaagctttattgtat ctatgttgctattggtcagaagagatccacagtggctcagattgtaaagaggcttactgatgcagatgccatgaagtaca ctgtgattgtcagtgctacagcttctgatgctgctcccttacagtatctggctccttactcaggatgtgccatgggagaa ttcttcagagataacggcatgcacgccctcatcatctacgacgatctgtcaaaacaggctgtagcctaccgtcaaatgtc actgcttctgagacgtccccccggtcgtgaagcctaccctggtgatgtgttctacctccattcacgtttgttggagcgtg ctgccaagatgaatgatgataacggtggtggatctctcactgctctccccgtcatcgagacccaggctggtgatgtgtca gcctacatccccactaacgtcatctctatcacagacggacagatcttcttggagactgagttgttctacaagggtgtacg tccagcaattaatgtaggattatctgtcagtagggtaggatcagcagcccagacaaaagccatgaaacaggtagcaggct ctatgaaattggagttggcccagtacagagaagtggcagctttcgctcagtttggatctgatttggatcaggctacacag aatttactgaacaggggagttcgtctgaccgagttactcaaacaggctcagtatggtaagcaacttcattga |
Protein
Protein ID | pfu_aug1.0_4962.1_67111.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4962.1_67111.t1 MLSARLAASLVRQLPRAAPKVCQHALGAGLISAKKFSTSTHHHAAGASAEVSSILEERILGQTTQAGLEETGRVLSIGDG IARVYGLKNIQAEEMVEFSSGLKGPITSPDRQRVGVKAPGIIPRISVKEPMQTGIKAVDSLVPIGRGQRELIIGDRQTGK TAIAIDTIINQKRFNDGTNEKAKLYCIYVAIGQKRSTVAQIVKRLTDADAMKYTVIVSATASDAAPLQYLAPYSGCAMGE FFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDDNGGGSLTALPVIETQAGDVS AYIPTNVISITDGQIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDQATQ NLLNRGVRLTELLKQAQYGKQLH |