Gene
| Gene Model ID | pfu_aug1.0_4962.1_67111 |
|---|---|
| Locus | scaffold4962.1 : 25071 ... 35195 : - |
| To GenomeBrowser | scaffold4962.1:25071..35195 |
| Genes list of scaffold | scaffold4962.1 |
| Synonym | pfu_aug2.0_39.1_30039 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4962.1_67111.t1 | 1 | 1 | ATP-synt_ab_N | 69 | 115 | 9.2e-06 | 25.7 | 1.1e-08 | 3.2e-05 | 24.0 |
| pfu_aug1.0_4962.1_67111.t1 | 1 | 1 | ATP-synt_ab | 133 | 357 | 0.0 | 242.9 | 0.0 | 0.0 | 242.4 |
| pfu_aug1.0_4962.1_67111.t1 | 1 | 1 | ATP-synt_ab_C | 369 | 418 | 1.2e-16 | 61.1 | 1.1e-19 | 3.2e-16 | 59.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4962.1_67111.t1 | gi|116008297|gb|ABJ51956.1| | mitochondrial H+ ATPase a subunit [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4962.1_67111.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4962.1_67111.t1 atgctttcggccagattagcagcaagtctcgtaagacagcttcccagggctgcaccaaaggtttgccaacatgccctggg agctggacttatttctgccaaaaagttttccacatctacacatcaccatgctgcaggagctagtgcggaagtgtcatcca tcttggaggagaggattttgggacagacaacacaagctggattagaggaaaccggtcgtgtactatccatcggagacggt attgctcgtgtttatggtctaaagaatattcaggcagaagaaatggtagaattctccagtggtttaaagggaccaatcac atcacctgacagacagagggtaggagttaaggcccctggtatcatcccccgtatctcagtaaaggaacctatgcagaccg gtattaaggctgtagatagcttagtacctattggtagaggtcagagagaactcatcattggtgacaggcagactggcaaa accgctattgcaattgacacaattattaaccagaagaggttcaacgatggaacaaatgagaaggccaagctttattgtat ctatgttgctattggtcagaagagatccacagtggctcagattgtaaagaggcttactgatgcagatgccatgaagtaca ctgtgattgtcagtgctacagcttctgatgctgctcccttacagtatctggctccttactcaggatgtgccatgggagaa ttcttcagagataacggcatgcacgccctcatcatctacgacgatctgtcaaaacaggctgtagcctaccgtcaaatgtc actgcttctgagacgtccccccggtcgtgaagcctaccctggtgatgtgttctacctccattcacgtttgttggagcgtg ctgccaagatgaatgatgataacggtggtggatctctcactgctctccccgtcatcgagacccaggctggtgatgtgtca gcctacatccccactaacgtcatctctatcacagacggacagatcttcttggagactgagttgttctacaagggtgtacg tccagcaattaatgtaggattatctgtcagtagggtaggatcagcagcccagacaaaagccatgaaacaggtagcaggct ctatgaaattggagttggcccagtacagagaagtggcagctttcgctcagtttggatctgatttggatcaggctacacag aatttactgaacaggggagttcgtctgaccgagttactcaaacaggctcagtatggtaagcaacttcattga |
|
Protein
| Protein ID | pfu_aug1.0_4962.1_67111.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4962.1_67111.t1 MLSARLAASLVRQLPRAAPKVCQHALGAGLISAKKFSTSTHHHAAGASAEVSSILEERILGQTTQAGLEETGRVLSIGDG IARVYGLKNIQAEEMVEFSSGLKGPITSPDRQRVGVKAPGIIPRISVKEPMQTGIKAVDSLVPIGRGQRELIIGDRQTGK TAIAIDTIINQKRFNDGTNEKAKLYCIYVAIGQKRSTVAQIVKRLTDADAMKYTVIVSATASDAAPLQYLAPYSGCAMGE FFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDDNGGGSLTALPVIETQAGDVS AYIPTNVISITDGQIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDQATQ NLLNRGVRLTELLKQAQYGKQLH |
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