Gene
Gene Model ID | pfu_aug1.0_4962.1_67114 |
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Locus | scaffold4962.1 : 53051 ... 65015 : - |
To GenomeBrowser | scaffold4962.1:53051..65015 |
Genes list of scaffold | scaffold4962.1 |
Synonym | pfu_aug2.0_39.1_30036 |
Manual annotation
Study field | Biomineralization |
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Gene name | PfCHS1 |
Description | chitin synthase in Pinctada fucatapartial sequence, best hit to BLAST BAF73720.1C-terminal part is in the previous gene (pfu_aug1.0_4962.1_67113) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4962.1_67114.t1 | 2 | 1 | Myosin_head | 50 | 175 | 0.0 | 176.4 | 5.6e-40 | 8.3e-36 | 123.2 |
pfu_aug1.0_4962.1_67114.t1 | 2 | 2 | Myosin_head | 181 | 270 | 0.0 | 176.4 | 2.4e-18 | 3.5e-14 | 51.8 |
Transcript
Transcript ID | pfu_aug1.0_4962.1_67114.t1 |
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Definition | - |
>pfu_aug1.0_4962.1_67114.t1 atgcgagacgaggagatgcagtgtggagtgttcagtgattctgaggaatacgaacactacaggaaaatgttcacagagct taccaccatcatgattcagataggcttctcagaggaggtcaaatcaaccggaatatctggccacaaagaagaaagagcat gtcttcttgacatgtcaggcttcgagaatttccgtctgaacggatttgaccagttcttgatcaacatctcaaatgagaaa attcaacagtacttcatggactatatttttccacgcgagaggagagaatacgagattgaaggcattgaatggagagatat tgaatatcactgcaacgatgatgttctagagttgatcttcaagaaaccagacggaatactcccacttttagacgaggaat ccaacttcccccagtccactgacaattcctttgtacagaaaatcaacaagtactgcgaggaaaaccccagatatgtcgcc aacgtctacaacaagccggtgtttaccatcaaacactatgctgaacaggaactgtttcgtttccacaagtgtataaagtc taaccaacatcttgctgccaacaaatttgattcagagttagtacgtagacagcttctgtgtaatggactgatggaaattg cagaactgcgacgggacggttacccaatcaggatcaaatacgaagatttcgtcgagaggtacagagatatcagcggtttt gtcaacccaaaatctgacgacctaggtcaaacacttgtcattttgaaatccttgaatatcgaaggcttcaaagctggtcg aagcaaagtaaagcgtgagtttgaggacagtgactacatcttcaaggagataatgaagggaattcgtctcttcttgtact tcttcttcttcatcatgatactgggatgcgccgtcaccagcaaaatgtccttactgctcctcacttctggaatcaacaag gataccgagtcacgtggtgaacacatggtgggtttgttgttctgtatgtgtggacccatgctctggaactggcttatggc tttcatgaagattctcttcggcgggaaagaatggccctcgtttactacgtttgcgattttactgctgttggagtgtttac aaacattcggattatgtcttctgctgttccggattttgccgtcaacggatttcttccgtggactggtaatatcgttcgca gtctgccagattccgagtctactgaaggtgatagtccacgagaaacgtcctaatcccagcatcagtgaagtggtggtgat aatcatgaacatagcagccttcttggtgcaggtgtcatctatacctttctttacggtgggagaatttttgaaggagggca accattctatcgtagagggttataaccagaccacaattctccgtacttcagtgaccgtaccaaacaactgtgaatgggaa ctaccgttggctatcatattgttgtcaataggatggtgggaaaactacgtctctggagagtggaccgtctttggccgaat cacgattccattcaagcaatggcgttcgattttacaagacgtgcgtgaaacatcatactttctgatagggccttgcaaaa ttggattatgtgtgttactttcaaggcttctaacaaacaatacgaatttcatcttgccagcaacctcggagtttaatgct accaccagcaagttctcctctaaagtagaggaggtcagcgtatcctacagtctcatgttcatacaaattggatctggaat aatctgcacttacctggctggtctcgcatgcaaactccatatgcagaggatggcctttgctttgccgctgaccctagctc cacctttgtcattggcggtgatatatttccagtgtgagtaccacttccttccggcacattggcacatgggtggctggttc tgtccggagcggagcctgatggagctgttggtgccattgatctgcgctctccttctctggttatcttactgcatcaccgt gtctcacatctggtttcctcagagtgaaaggatggctaagattgaaaagttattcatcacaccacatttcgaaggaatat ttcctgatttcacccttggtctgaggagacgccgtaacgacaaagaagtgaagcttaccggctttgataccttccgttat gtcggcgaggatacgtactacatggatgatgtgtacaacggatccaatattacacctcaggtttacgtctgcgcaacaat gtggcatgagacaagacaggaaatgacgcaactgctcaaatctctattcaggttggattatgtacactgtgcaagcaagc tagctcaagaaaaattcagaataaacgatcctgatttcttcaatttagagctgcatgtcatttttgatgacgcttttgaa cttgacgaaaaagtagacaaatacataccaaacagctttgtgaagcagctcgtggaatgcatggaggacgccgccagatc cgttgtcaaaggtcctatcagcctgttacccccggagaaagtggccactccgtacggaggaaaactgatctggactatgc ctggacacaccaaactcgtggtccacatgaaggacaagaacaagatgaggcacaggaagaggtggtcacagtgtatgtac atgtactatctgctcggatacaaactatttggcgccaaggaagcggacaattatatgatggaggacgcagagagctccat gaccaaacttaaaaaccggaagaagggaaaatctaagaaaactcagaggtcacggccgttaagatcgctcttcatgcgca tgactccggagcaatacgaacaggtaattttcttttgtgttcctctttttgttgcatatgcactttaccatcagaatcta ctcaatcaacagtcaagttttagccaggtgaatgggatgtatgatgtcagcgttcagtaa |
Protein
Protein ID | pfu_aug1.0_4962.1_67114.t1 |
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Definition | - |
>pfu_aug1.0_4962.1_67114.t1 MRDEEMQCGVFSDSEEYEHYRKMFTELTTIMIQIGFSEEVKSTGISGHKEERACLLDMSGFENFRLNGFDQFLINISNEK IQQYFMDYIFPRERREYEIEGIEWRDIEYHCNDDVLELIFKKPDGILPLLDEESNFPQSTDNSFVQKINKYCEENPRYVA NVYNKPVFTIKHYAEQELFRFHKCIKSNQHLAANKFDSELVRRQLLCNGLMEIAELRRDGYPIRIKYEDFVERYRDISGF VNPKSDDLGQTLVILKSLNIEGFKAGRSKVKREFEDSDYIFKEIMKGIRLFLYFFFFIMILGCAVTSKMSLLLLTSGINK DTESRGEHMVGLLFCMCGPMLWNWLMAFMKILFGGKEWPSFTTFAILLLLECLQTFGLCLLLFRILPSTDFFRGLVISFA VCQIPSLLKVIVHEKRPNPSISEVVVIIMNIAAFLVQVSSIPFFTVGEFLKEGNHSIVEGYNQTTILRTSVTVPNNCEWE LPLAIILLSIGWWENYVSGEWTVFGRITIPFKQWRSILQDVRETSYFLIGPCKIGLCVLLSRLLTNNTNFILPATSEFNA TTSKFSSKVEEVSVSYSLMFIQIGSGIICTYLAGLACKLHMQRMAFALPLTLAPPLSLAVIYFQCEYHFLPAHWHMGGWF CPERSLMELLVPLICALLLWLSYCITVSHIWFPQSERMAKIEKLFITPHFEGIFPDFTLGLRRRRNDKEVKLTGFDTFRY VGEDTYYMDDVYNGSNITPQVYVCATMWHETRQEMTQLLKSLFRLDYVHCASKLAQEKFRINDPDFFNLELHVIFDDAFE LDEKVDKYIPNSFVKQLVECMEDAARSVVKGPISLLPPEKVATPYGGKLIWTMPGHTKLVVHMKDKNKMRHRKRWSQCMY MYYLLGYKLFGAKEADNYMMEDAESSMTKLKNRKKGKSKKTQRSRPLRSLFMRMTPEQYEQVIFFCVPLFVAYALYHQNL LNQQSSFSQVNGMYDVSVQ |