Gene
| Gene Model ID | pfu_aug1.0_4962.1_67114 |
|---|---|
| Locus | scaffold4962.1 : 53051 ... 65015 : - |
| To GenomeBrowser | scaffold4962.1:53051..65015 |
| Genes list of scaffold | scaffold4962.1 |
| Synonym | pfu_aug2.0_39.1_30036 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | PfCHS1 |
| Description | chitin synthase in Pinctada fucatapartial sequence, best hit to BLAST BAF73720.1C-terminal part is in the previous gene (pfu_aug1.0_4962.1_67113) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4962.1_67114.t1 | 2 | 1 | Myosin_head | 50 | 175 | 0.0 | 176.4 | 5.6e-40 | 8.3e-36 | 123.2 |
| pfu_aug1.0_4962.1_67114.t1 | 2 | 2 | Myosin_head | 181 | 270 | 0.0 | 176.4 | 2.4e-18 | 3.5e-14 | 51.8 |
Transcript
| Transcript ID | pfu_aug1.0_4962.1_67114.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4962.1_67114.t1 atgcgagacgaggagatgcagtgtggagtgttcagtgattctgaggaatacgaacactacaggaaaatgttcacagagct taccaccatcatgattcagataggcttctcagaggaggtcaaatcaaccggaatatctggccacaaagaagaaagagcat gtcttcttgacatgtcaggcttcgagaatttccgtctgaacggatttgaccagttcttgatcaacatctcaaatgagaaa attcaacagtacttcatggactatatttttccacgcgagaggagagaatacgagattgaaggcattgaatggagagatat tgaatatcactgcaacgatgatgttctagagttgatcttcaagaaaccagacggaatactcccacttttagacgaggaat ccaacttcccccagtccactgacaattcctttgtacagaaaatcaacaagtactgcgaggaaaaccccagatatgtcgcc aacgtctacaacaagccggtgtttaccatcaaacactatgctgaacaggaactgtttcgtttccacaagtgtataaagtc taaccaacatcttgctgccaacaaatttgattcagagttagtacgtagacagcttctgtgtaatggactgatggaaattg cagaactgcgacgggacggttacccaatcaggatcaaatacgaagatttcgtcgagaggtacagagatatcagcggtttt gtcaacccaaaatctgacgacctaggtcaaacacttgtcattttgaaatccttgaatatcgaaggcttcaaagctggtcg aagcaaagtaaagcgtgagtttgaggacagtgactacatcttcaaggagataatgaagggaattcgtctcttcttgtact tcttcttcttcatcatgatactgggatgcgccgtcaccagcaaaatgtccttactgctcctcacttctggaatcaacaag gataccgagtcacgtggtgaacacatggtgggtttgttgttctgtatgtgtggacccatgctctggaactggcttatggc tttcatgaagattctcttcggcgggaaagaatggccctcgtttactacgtttgcgattttactgctgttggagtgtttac aaacattcggattatgtcttctgctgttccggattttgccgtcaacggatttcttccgtggactggtaatatcgttcgca gtctgccagattccgagtctactgaaggtgatagtccacgagaaacgtcctaatcccagcatcagtgaagtggtggtgat aatcatgaacatagcagccttcttggtgcaggtgtcatctatacctttctttacggtgggagaatttttgaaggagggca accattctatcgtagagggttataaccagaccacaattctccgtacttcagtgaccgtaccaaacaactgtgaatgggaa ctaccgttggctatcatattgttgtcaataggatggtgggaaaactacgtctctggagagtggaccgtctttggccgaat cacgattccattcaagcaatggcgttcgattttacaagacgtgcgtgaaacatcatactttctgatagggccttgcaaaa ttggattatgtgtgttactttcaaggcttctaacaaacaatacgaatttcatcttgccagcaacctcggagtttaatgct accaccagcaagttctcctctaaagtagaggaggtcagcgtatcctacagtctcatgttcatacaaattggatctggaat aatctgcacttacctggctggtctcgcatgcaaactccatatgcagaggatggcctttgctttgccgctgaccctagctc cacctttgtcattggcggtgatatatttccagtgtgagtaccacttccttccggcacattggcacatgggtggctggttc tgtccggagcggagcctgatggagctgttggtgccattgatctgcgctctccttctctggttatcttactgcatcaccgt gtctcacatctggtttcctcagagtgaaaggatggctaagattgaaaagttattcatcacaccacatttcgaaggaatat ttcctgatttcacccttggtctgaggagacgccgtaacgacaaagaagtgaagcttaccggctttgataccttccgttat gtcggcgaggatacgtactacatggatgatgtgtacaacggatccaatattacacctcaggtttacgtctgcgcaacaat gtggcatgagacaagacaggaaatgacgcaactgctcaaatctctattcaggttggattatgtacactgtgcaagcaagc tagctcaagaaaaattcagaataaacgatcctgatttcttcaatttagagctgcatgtcatttttgatgacgcttttgaa cttgacgaaaaagtagacaaatacataccaaacagctttgtgaagcagctcgtggaatgcatggaggacgccgccagatc cgttgtcaaaggtcctatcagcctgttacccccggagaaagtggccactccgtacggaggaaaactgatctggactatgc ctggacacaccaaactcgtggtccacatgaaggacaagaacaagatgaggcacaggaagaggtggtcacagtgtatgtac atgtactatctgctcggatacaaactatttggcgccaaggaagcggacaattatatgatggaggacgcagagagctccat gaccaaacttaaaaaccggaagaagggaaaatctaagaaaactcagaggtcacggccgttaagatcgctcttcatgcgca tgactccggagcaatacgaacaggtaattttcttttgtgttcctctttttgttgcatatgcactttaccatcagaatcta ctcaatcaacagtcaagttttagccaggtgaatgggatgtatgatgtcagcgttcagtaa |
|
Protein
| Protein ID | pfu_aug1.0_4962.1_67114.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4962.1_67114.t1 MRDEEMQCGVFSDSEEYEHYRKMFTELTTIMIQIGFSEEVKSTGISGHKEERACLLDMSGFENFRLNGFDQFLINISNEK IQQYFMDYIFPRERREYEIEGIEWRDIEYHCNDDVLELIFKKPDGILPLLDEESNFPQSTDNSFVQKINKYCEENPRYVA NVYNKPVFTIKHYAEQELFRFHKCIKSNQHLAANKFDSELVRRQLLCNGLMEIAELRRDGYPIRIKYEDFVERYRDISGF VNPKSDDLGQTLVILKSLNIEGFKAGRSKVKREFEDSDYIFKEIMKGIRLFLYFFFFIMILGCAVTSKMSLLLLTSGINK DTESRGEHMVGLLFCMCGPMLWNWLMAFMKILFGGKEWPSFTTFAILLLLECLQTFGLCLLLFRILPSTDFFRGLVISFA VCQIPSLLKVIVHEKRPNPSISEVVVIIMNIAAFLVQVSSIPFFTVGEFLKEGNHSIVEGYNQTTILRTSVTVPNNCEWE LPLAIILLSIGWWENYVSGEWTVFGRITIPFKQWRSILQDVRETSYFLIGPCKIGLCVLLSRLLTNNTNFILPATSEFNA TTSKFSSKVEEVSVSYSLMFIQIGSGIICTYLAGLACKLHMQRMAFALPLTLAPPLSLAVIYFQCEYHFLPAHWHMGGWF CPERSLMELLVPLICALLLWLSYCITVSHIWFPQSERMAKIEKLFITPHFEGIFPDFTLGLRRRRNDKEVKLTGFDTFRY VGEDTYYMDDVYNGSNITPQVYVCATMWHETRQEMTQLLKSLFRLDYVHCASKLAQEKFRINDPDFFNLELHVIFDDAFE LDEKVDKYIPNSFVKQLVECMEDAARSVVKGPISLLPPEKVATPYGGKLIWTMPGHTKLVVHMKDKNKMRHRKRWSQCMY MYYLLGYKLFGAKEADNYMMEDAESSMTKLKNRKKGKSKKTQRSRPLRSLFMRMTPEQYEQVIFFCVPLFVAYALYHQNL LNQQSSFSQVNGMYDVSVQ |
|