Gene
Gene Model ID | pfu_aug1.0_4985.1_52417 |
---|---|
Locus | scaffold4985.1 : 13536 ... 23687 : + |
To GenomeBrowser | scaffold4985.1:13536..23687 |
Genes list of scaffold | scaffold4985.1 |
Synonym | NA |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | Pifuc-Dm-like B |
Description | Reciprocal BLASTP best hit to NCBI Accession ADB22403 (Saccoglossus kowalevskii) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4985.1_52417.t1 | 1 | 1 | DM | 2 | 35 | 1.3e-15 | 56.6 | 3.3e-19 | 2.5e-15 | 55.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4985.1_52417.t1 | gi|284005057|ref|NP_001164688.1| | double sex and mab-3 related transcription factor [Saccoglossus kowalevskii] | 2.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_4985.1_52417.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4985.1_52417.t1 atggtatcatggcttaaaggacataagagacattgtaaattcaaagactgcacttgtccaaaatgcaatctgatcgcaga gagacagcgcgtgatggcggcacaagttgccttgaaacgccagcaagccgctgaagacgccattgcgttaggactaagat gtgcgtccgagggtaacatccctatcatgacacagggaccgttgtgggggccagggaccgtgtcaccaccagagaaaacc caagacgaccagactgatgttgatatagatgtagattccagtgatgatccagttcgtaaacattcctgtagagctgcaaa cacttcaagtgtcaataaaaatgtttattttgatacaattataaagtccagtgtgaagcattatcgatatcttgagaaaa atgttcagacaccaatcactcttgaatgccttaaattgaatgcaaattcgtga |
Protein
Protein ID | pfu_aug1.0_4985.1_52417.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4985.1_52417.t1 MVSWLKGHKRHCKFKDCTCPKCNLIAERQRVMAAQVALKRQQAAEDAIALGLRCASEGNIPIMTQGPLWGPGTVSPPEKT QDDQTDVDIDVDSSDDPVRKHSCRAANTSSVNKNVYFDTIIKSSVKHYRYLEKNVQTPITLECLKLNANS |