Gene
| Gene Model ID | pfu_aug1.0_4985.1_52419 |
|---|---|
| Locus | scaffold4985.1 : 50516 ... 53330 : + |
| To GenomeBrowser | scaffold4985.1:50516..53330 |
| Genes list of scaffold | scaffold4985.1 |
| Synonym | pfu_aug2.0_301.1_03966 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | DMRT-like |
| Description | Best hit to ABS88697.1 (doublesex and mab3 related transcription factor-like protein, Crassostrea gigas). DM DNA binding domain and DMRTA motif. |
| mRNA evidence |
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-Dm-like A |
| Description | Reciprocal BLASTP best hit to NCBI Accession ABS88697 (Crassostrea gigas) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4985.1_52419.t1 | 1 | 1 | DM | 24 | 70 | 1.6e-23 | 81.9 | 5.3e-27 | 2.6e-23 | 81.2 |
| pfu_aug1.0_4985.1_52419.t1 | 2 | 1 | DMA | 105 | 112 | 4.5e-13 | 48.8 | 0.069 | 340.0 | 1.1 |
| pfu_aug1.0_4985.1_52419.t1 | 2 | 2 | DMA | 208 | 242 | 4.5e-13 | 48.8 | 8.6e-16 | 4.2e-12 | 45.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4985.1_52419.t1 | gi|154867320|gb|ABS88697.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4985.1_52419.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4985.1_52419.t1 atgagttcagatgacgagaagggtgactctttcaactcttcatttatgagggctgcagatcggtacccaagaaccccgaa atgtgcaaggtgcaggaaccacggggtggtgtcagcactgaagggccacaaaaggtactgtagatggagagactgtgttt gtgcaaaatgtactcttatagcagaaagacagagggtcatggcagctcaagttgctctgaggagacagcaagcacaagaa gaaaatgaagcaagagagctcggcatgctttacggaccgaatggcctcttacaaataaatccagaacatgtaaccatctt tccaaacaacaagaaattcatagagcctagtagtacattagatgacagagaagacgatgcccctgctgtaaaaagattga agactgatgacagtaatgacaaaagaaatgcctcgccgcattcacattgttcatcgcccgacagattggaaagggcgcat tcccctgccgaatcgactggatcgcacaacgagtcaagatattcggatcccccttcaccaaattttgacatccgtggcga gaacagtacaaaatcttcggaaagtggctctgacaaatctacaaatggcaagaaaaactatctagacgttctcagtcgta tttttccacaaatgaaaagaagcgtgctacaattaattctacaagggtgcaataatgacatggtgcaagcaattgaacag gttttgagcaaccacaatagcgatgagactacatcatcatcggccatcagcacgtcatctccatttctaccgacactcgg aaccacttctatgagttcttcagctttcaagtctgcattttcaccaatttcgacaatacccaatgcgcattcactcagtg ctatgaggtatgcctggggagggataggggctagaggtttgctatccatgcccttacccccggcgataccaggacttgcc atgagtggggcatacgctcgttaccctactggactgtcctccgctaccggatccgaaccctttcattatgctatgtatcc ctgttgcccaacaaaaccgttttcatcctctacgtcggataaagctggctgcattggtgaataa |
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Protein
| Protein ID | pfu_aug1.0_4985.1_52419.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4985.1_52419.t1 MSSDDEKGDSFNSSFMRAADRYPRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQE ENEARELGMLYGPNGLLQINPEHVTIFPNNKKFIEPSSTLDDREDDAPAVKRLKTDDSNDKRNASPHSHCSSPDRLERAH SPAESTGSHNESRYSDPPSPNFDIRGENSTKSSESGSDKSTNGKKNYLDVLSRIFPQMKRSVLQLILQGCNNDMVQAIEQ VLSNHNSDETTSSSAISTSSPFLPTLGTTSMSSSAFKSAFSPISTIPNAHSLSAMRYAWGGIGARGLLSMPLPPAIPGLA MSGAYARYPTGLSSATGSEPFHYAMYPCCPTKPFSSSTSDKAGCIGE |
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