Gene
Gene Model ID | pfu_aug1.0_4985.1_52419 |
---|---|
Locus | scaffold4985.1 : 50516 ... 53330 : + |
To GenomeBrowser | scaffold4985.1:50516..53330 |
Genes list of scaffold | scaffold4985.1 |
Synonym | pfu_aug2.0_301.1_03966 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | DMRT-like |
Description | Best hit to ABS88697.1 (doublesex and mab3 related transcription factor-like protein, Crassostrea gigas). DM DNA binding domain and DMRTA motif. |
mRNA evidence |
Study field | Reproduction |
---|---|
Gene name | Pifuc-Dm-like A |
Description | Reciprocal BLASTP best hit to NCBI Accession ABS88697 (Crassostrea gigas) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4985.1_52419.t1 | 1 | 1 | DM | 24 | 70 | 1.6e-23 | 81.9 | 5.3e-27 | 2.6e-23 | 81.2 |
pfu_aug1.0_4985.1_52419.t1 | 2 | 1 | DMA | 105 | 112 | 4.5e-13 | 48.8 | 0.069 | 340.0 | 1.1 |
pfu_aug1.0_4985.1_52419.t1 | 2 | 2 | DMA | 208 | 242 | 4.5e-13 | 48.8 | 8.6e-16 | 4.2e-12 | 45.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4985.1_52419.t1 | gi|154867320|gb|ABS88697.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
mantle | 1 |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_4985.1_52419.t1 |
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Definition | - |
>pfu_aug1.0_4985.1_52419.t1 atgagttcagatgacgagaagggtgactctttcaactcttcatttatgagggctgcagatcggtacccaagaaccccgaa atgtgcaaggtgcaggaaccacggggtggtgtcagcactgaagggccacaaaaggtactgtagatggagagactgtgttt gtgcaaaatgtactcttatagcagaaagacagagggtcatggcagctcaagttgctctgaggagacagcaagcacaagaa gaaaatgaagcaagagagctcggcatgctttacggaccgaatggcctcttacaaataaatccagaacatgtaaccatctt tccaaacaacaagaaattcatagagcctagtagtacattagatgacagagaagacgatgcccctgctgtaaaaagattga agactgatgacagtaatgacaaaagaaatgcctcgccgcattcacattgttcatcgcccgacagattggaaagggcgcat tcccctgccgaatcgactggatcgcacaacgagtcaagatattcggatcccccttcaccaaattttgacatccgtggcga gaacagtacaaaatcttcggaaagtggctctgacaaatctacaaatggcaagaaaaactatctagacgttctcagtcgta tttttccacaaatgaaaagaagcgtgctacaattaattctacaagggtgcaataatgacatggtgcaagcaattgaacag gttttgagcaaccacaatagcgatgagactacatcatcatcggccatcagcacgtcatctccatttctaccgacactcgg aaccacttctatgagttcttcagctttcaagtctgcattttcaccaatttcgacaatacccaatgcgcattcactcagtg ctatgaggtatgcctggggagggataggggctagaggtttgctatccatgcccttacccccggcgataccaggacttgcc atgagtggggcatacgctcgttaccctactggactgtcctccgctaccggatccgaaccctttcattatgctatgtatcc ctgttgcccaacaaaaccgttttcatcctctacgtcggataaagctggctgcattggtgaataa |
Protein
Protein ID | pfu_aug1.0_4985.1_52419.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4985.1_52419.t1 MSSDDEKGDSFNSSFMRAADRYPRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQE ENEARELGMLYGPNGLLQINPEHVTIFPNNKKFIEPSSTLDDREDDAPAVKRLKTDDSNDKRNASPHSHCSSPDRLERAH SPAESTGSHNESRYSDPPSPNFDIRGENSTKSSESGSDKSTNGKKNYLDVLSRIFPQMKRSVLQLILQGCNNDMVQAIEQ VLSNHNSDETTSSSAISTSSPFLPTLGTTSMSSSAFKSAFSPISTIPNAHSLSAMRYAWGGIGARGLLSMPLPPAIPGLA MSGAYARYPTGLSSATGSEPFHYAMYPCCPTKPFSSSTSDKAGCIGE |