Gene
| Gene Model ID | pfu_aug1.0_4988.1_67121 |
|---|---|
| Locus | scaffold4988.1 : 35658 ... 54015 : - |
| To GenomeBrowser | scaffold4988.1:35658..54015 |
| Genes list of scaffold | scaffold4988.1 |
| Synonym | pfu_aug2.0_1629.1_31807 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4988.1_67121.t1 | 10 | 1 | zf-C2H2_4 | 262 | 284 | 8.5e-26 | 88.3 | 3.3e-06 | 0.0055 | 16.9 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 1 | zf-C2H2 | 263 | 284 | 6.0e-24 | 82.8 | 1.1e-05 | 0.018 | 15.3 |
| pfu_aug1.0_4988.1_67121.t1 | 11 | 1 | zf-H2C2_2 | 263 | 272 | 2.9e-15 | 55.6 | 0.0085 | 14.0 | 6.1 |
| pfu_aug1.0_4988.1_67121.t1 | 6 | 1 | zf-Di19 | 263 | 287 | 2.7e-06 | 27.3 | 0.0022 | 3.6 | 7.7 |
| pfu_aug1.0_4988.1_67121.t1 | 11 | 2 | zf-H2C2_2 | 276 | 313 | 2.9e-15 | 55.6 | 0.084 | 140.0 | 3.0 |
| pfu_aug1.0_4988.1_67121.t1 | 6 | 2 | zf-Di19 | 303 | 356 | 2.7e-06 | 27.3 | 5.6e-06 | 0.0092 | 16.0 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 2 | zf-C2H2 | 304 | 326 | 6.0e-24 | 82.8 | 0.00013 | 0.21 | 11.9 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 2 | zf-C2H2_4 | 305 | 326 | 8.5e-26 | 88.3 | 9.2e-05 | 0.15 | 12.4 |
| pfu_aug1.0_4988.1_67121.t1 | 11 | 3 | zf-H2C2_2 | 317 | 344 | 2.9e-15 | 55.6 | 0.0095 | 16.0 | 6.0 |
| pfu_aug1.0_4988.1_67121.t1 | 6 | 3 | zf-Di19 | 333 | 382 | 2.7e-06 | 27.3 | 0.016 | 26.0 | 5.0 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 3 | zf-C2H2 | 334 | 356 | 6.0e-24 | 82.8 | 0.00019 | 0.32 | 11.4 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 3 | zf-C2H2_4 | 335 | 356 | 8.5e-26 | 88.3 | 0.00036 | 0.6 | 10.5 |
| pfu_aug1.0_4988.1_67121.t1 | 11 | 4 | zf-H2C2_2 | 347 | 373 | 2.9e-15 | 55.6 | 0.0016 | 2.7 | 8.4 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 4 | zf-C2H2_4 | 364 | 385 | 8.5e-26 | 88.3 | 5.3e-06 | 0.0088 | 16.3 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 4 | zf-C2H2 | 364 | 385 | 6.0e-24 | 82.8 | 2.7e-05 | 0.044 | 14.1 |
| pfu_aug1.0_4988.1_67121.t1 | 11 | 5 | zf-H2C2_2 | 377 | 401 | 2.9e-15 | 55.6 | 0.00032 | 0.53 | 10.6 |
| pfu_aug1.0_4988.1_67121.t1 | 6 | 4 | zf-Di19 | 391 | 444 | 2.7e-06 | 27.3 | 0.00079 | 1.3 | 9.2 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 5 | zf-C2H2_4 | 392 | 413 | 8.5e-26 | 88.3 | 1.9e-07 | 0.00031 | 20.8 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 5 | zf-C2H2 | 392 | 413 | 6.0e-24 | 82.8 | 3.6e-08 | 5.9e-05 | 23.1 |
| pfu_aug1.0_4988.1_67121.t1 | 11 | 6 | zf-H2C2_2 | 406 | 430 | 2.9e-15 | 55.6 | 9.4e-06 | 0.015 | 15.5 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 6 | zf-C2H2_4 | 422 | 444 | 8.5e-26 | 88.3 | 0.0013 | 2.2 | 8.8 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 6 | zf-C2H2 | 422 | 444 | 6.0e-24 | 82.8 | 2.6e-05 | 0.042 | 14.1 |
| pfu_aug1.0_4988.1_67121.t1 | 11 | 7 | zf-H2C2_2 | 435 | 462 | 2.9e-15 | 55.6 | 1.2e-05 | 0.02 | 15.1 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 7 | zf-C2H2_4 | 452 | 474 | 8.5e-26 | 88.3 | 4.4e-05 | 0.072 | 13.4 |
| pfu_aug1.0_4988.1_67121.t1 | 6 | 5 | zf-Di19 | 452 | 489 | 2.7e-06 | 27.3 | 0.00018 | 0.3 | 11.2 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 7 | zf-C2H2 | 453 | 474 | 6.0e-24 | 82.8 | 7.7e-05 | 0.13 | 12.6 |
| pfu_aug1.0_4988.1_67121.t1 | 11 | 8 | zf-H2C2_2 | 468 | 492 | 2.9e-15 | 55.6 | 0.00014 | 0.23 | 11.8 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 8 | zf-C2H2_4 | 480 | 505 | 8.5e-26 | 88.3 | 0.00025 | 0.41 | 11.0 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 8 | zf-C2H2 | 480 | 505 | 6.0e-24 | 82.8 | 0.016 | 26.0 | 5.3 |
| pfu_aug1.0_4988.1_67121.t1 | 11 | 9 | zf-H2C2_2 | 499 | 539 | 2.9e-15 | 55.6 | 0.27 | 450.0 | 1.4 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 9 | zf-C2H2_4 | 530 | 553 | 8.5e-26 | 88.3 | 0.012 | 20.0 | 5.7 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 9 | zf-C2H2 | 530 | 553 | 6.0e-24 | 82.8 | 0.0046 | 7.6 | 7.1 |
| pfu_aug1.0_4988.1_67121.t1 | 6 | 6 | zf-Di19 | 530 | 566 | 2.7e-06 | 27.3 | 0.0073 | 12.0 | 6.1 |
| pfu_aug1.0_4988.1_67121.t1 | 11 | 10 | zf-H2C2_2 | 545 | 568 | 2.9e-15 | 55.6 | 1.9e-05 | 0.031 | 14.5 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 10 | zf-C2H2_4 | 559 | 582 | 8.5e-26 | 88.3 | 0.00065 | 1.1 | 9.7 |
| pfu_aug1.0_4988.1_67121.t1 | 10 | 10 | zf-C2H2 | 559 | 582 | 6.0e-24 | 82.8 | 0.00027 | 0.45 | 10.9 |
| pfu_aug1.0_4988.1_67121.t1 | 11 | 11 | zf-H2C2_2 | 574 | 584 | 2.9e-15 | 55.6 | 0.97 | 1600.0 | -0.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4988.1_67121.t1 | gi|118344378|ref|NP_001072011.1| | zinc finger protein [Ciona intestinalis] | 8.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4988.1_67121.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4988.1_67121.t1 atggagtccagtcgtcacagtcagagtgcaagtttaaagaatgcgctggtacaagactgtagattgtcgagtaccaagcc tagtgtccgtttggtggcaaaaggatcatatccccggtataaaaggcgtttgatgatcaaaaacataaatatgttggagg atgactttttaattatttttgacgaaggaaatacagctctttttcaaattgacataagaaatcacaatgtcacatcagtt cttggaggtttgaaagttgttagttttgacatggacccacattctttggaagtgtattacgtggaagagaatgactcgtt tttctctgtatttaaaatgaggaaaggaaaaatgtccactttcaatcttaaaggtccacacaaatttaaaagtgactcta aattgtgtactaaaataagtccacaaagaaatgggtcggaagaaattagaattggatggtccagtgatagtgaggatgtt tcaaaggagcggaatcttggaaatgatcatgatggcattaatgacagtaatgtagattgtgaaaatgctgaaggcatgga caataataaagtaaatagagaaaatgatttaccaatggatgtatcagaaaacaatgatgatatagaatacattcctcgtg ttaacatgaagagaaaacacaaaagagttaacttggagtattccaccggagagaaagaaaggagagggaaaagggtccgg ggaaaaatacagaagaaaaccacccaaaatgttaagaatgaattggagagaatgcatgaaaaaatttgcaaatattgttc aaaaaaatttgtcaattactctcgattggaaaaccatgtaaaaaaatatcataaagataaagaagatgtggaagaatatc ttgtgcaaattaagtcatgtaaagagttgtcatgcgtaaaatgtggaagtgagttcactgaagactcatctctcagagag catattgaaagtgttcacaaggcaagtgaaaaagatacaacttgcttcaaatgtaatagagattttcataatcgccggag tttaagaagacatatcagatatgtccataacaatagacagagtgagttatgtcatctgtgtcctgcaaagtttaagagca agtcaagtctacgacatcacatacttgagatccatgataagaaactggatgttcaatgtgaaatatgtggtcagaaattt tctagaaagaatttactcaataggcacatggtatctcatggtgttgacaagtcgagatggctggaatgttcagaatgtgg aaaaggattttggttcccgttcaaccttaaacgacacatccaaactgtccatggacctcaaggagacaaacagcattgct cgtattgtggaagaggtttcagttcaaaagcaggaatggtcagtcatgttcaacaagtgcacttcaatatgtttccattt cattgcccagtagaggagtgtaaagcaggatttggccgtaagaaagctgttgatgaacatatgaaacaagtgcacccaaa tgttgattatgtatctcttaagactatcagaaagagatacaagtactggaaatctacagaggaattattctattgttctc actgtagcagcagcttctgttataaggcaaagttagtggagcatatgcataatgctcatagcgacgcatttccttataaa tgtgacatttgtaaccagggtttcttggagtattcgttccttatgtaccaccaaaagaaggcacacaacaaagatattgg ttccatggatacaaatggtgatgtcaataagtcatctagcaatcaggttccagaccctgttaaagacacgtcaggaaatg attctttcagggaaaagttgaaggcgttattagagggaaatgacttgaccacaggaaatgctgagagtaaagctaatggc gtgtctacaacagaggaaaatgaggagattacttcctctcaggatgtaccaaacaatgatggcagtcaggtacttataca gaacaacacagttgaacttgtagagcccttggattctgaggatctcccagagggcagcacggtacattatataatagaag acgttggagatggaactgtcttaataaagatatatgtacagtttagtgcagagtaa |
|
Protein
| Protein ID | pfu_aug1.0_4988.1_67121.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4988.1_67121.t1 MESSRHSQSASLKNALVQDCRLSSTKPSVRLVAKGSYPRYKRRLMIKNINMLEDDFLIIFDEGNTALFQIDIRNHNVTSV LGGLKVVSFDMDPHSLEVYYVEENDSFFSVFKMRKGKMSTFNLKGPHKFKSDSKLCTKISPQRNGSEEIRIGWSSDSEDV SKERNLGNDHDGINDSNVDCENAEGMDNNKVNRENDLPMDVSENNDDIEYIPRVNMKRKHKRVNLEYSTGEKERRGKRVR GKIQKKTTQNVKNELERMHEKICKYCSKKFVNYSRLENHVKKYHKDKEDVEEYLVQIKSCKELSCVKCGSEFTEDSSLRE HIESVHKASEKDTTCFKCNRDFHNRRSLRRHIRYVHNNRQSELCHLCPAKFKSKSSLRHHILEIHDKKLDVQCEICGQKF SRKNLLNRHMVSHGVDKSRWLECSECGKGFWFPFNLKRHIQTVHGPQGDKQHCSYCGRGFSSKAGMVSHVQQVHFNMFPF HCPVEECKAGFGRKKAVDEHMKQVHPNVDYVSLKTIRKRYKYWKSTEELFYCSHCSSSFCYKAKLVEHMHNAHSDAFPYK CDICNQGFLEYSFLMYHQKKAHNKDIGSMDTNGDVNKSSSNQVPDPVKDTSGNDSFREKLKALLEGNDLTTGNAESKANG VSTTEENEEITSSQDVPNNDGSQVLIQNNTVELVEPLDSEDLPEGSTVHYIIEDVGDGTVLIKIYVQFSAE |
|