Gene
| Gene Model ID | pfu_aug1.0_49892.1_27241 |
|---|---|
| Locus | scaffold49892.1 : 1 ... 4247 : + |
| To GenomeBrowser | scaffold49892.1:1..4247 |
| Genes list of scaffold | scaffold49892.1 |
| Synonym | pfu_aug2.0_1522.1_08423 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_49892.1_27241.t1 | 1 | 1 | CS | 8 | 85 | 4.9e-11 | 43.0 | 4.1e-15 | 6.1e-11 | 42.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_49892.1_27241.t1 | gi|260789534|ref|XP_002589801.1| | hypothetical protein BRAFLDRAFT_125901 [Branchiostoma floridae] | 4.0e-24 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_49892.1_27241.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_49892.1_27241.t1 gtatctggtgagaagaaatcttgtagatttgactggcatcaaacaaactcttacatgacaatatctgtgtattctaaagt tactgtgccagagaagtgtacgataaaagctaatagagtcaggtgtgatatcagtattgttttcgatggaggaaatagtt tgtttgaaaacaacgttattctcagagaggttatagatccagtgaacagtcaagtaaagatgatgggtactaaagtagag ataaatctacggaaggtggagtcattcagctggccgtccctggagttaccagcacaaacagacagccagcaactagacaa tgataatgactctcctgattcttaa |
|
Protein
| Protein ID | pfu_aug1.0_49892.1_27241.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_49892.1_27241.t1 VSGEKKSCRFDWHQTNSYMTISVYSKVTVPEKCTIKANRVRCDISIVFDGGNSLFENNVILREVIDPVNSQVKMMGTKVE INLRKVESFSWPSLELPAQTDSQQLDNDNDSPDS |
|