Gene
| Gene Model ID | pfu_aug1.0_4996.1_01875 |
|---|---|
| Locus | scaffold4996.1 : 43516 ... 49000 : + |
| To GenomeBrowser | scaffold4996.1:43516..49000 |
| Genes list of scaffold | scaffold4996.1 |
| Synonym | pfu_aug2.0_39.1_30041 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4996.1_01875.t1 | 1 | 1 | KH_1 | 21 | 77 | 1.5e-11 | 43.7 | 4.9e-15 | 2.4e-11 | 43.0 |
| pfu_aug1.0_4996.1_01875.t1 | 1 | 1 | KH_3 | 29 | 70 | 7.8e-10 | 38.1 | 3.5e-13 | 1.7e-09 | 37.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4996.1_01875.t1 | gi|260814700|ref|XP_002602052.1| | hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae] | 6.0e-36 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 8 |
| egg-4cell | 3 |
| 8-16cell | 3 |
| egg-Dshape | 3 |
| trochophore | 2 |
| >Adult tissues | |
| Dshape | 3 |
| adductorMuscle | 2 |
| maleGonad | 1 |
| mantle | 2 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4996.1_01875.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4996.1_01875.t1 atgcctcctgataaagttttacactacaaaaattaccgagatgatgactttgactgtgaaatgagattactagtacatca gagccaggcgggatgtatcattggacgtgcaggattcaaaatcaaagaacttagagagaaaacaggatctcagataaagg tttactcacagtgttgtcctgaatccacagagagggttgtagcaattggtggaaaacctaaagttgttgtggataccatt gaaaccatacatgacttactccagactgcaccacctaaaggacccagccagccctatgaccctctgtattgggatgagtt tatggtaccagaatacggaggttactcagcttcagaaggtgggcgaggtaaaggaggcccacgtggagctccccctagtg gcagaatgggaggaatgggcggcggtatgggtggcatgagaggtggcagaggcggtatgatgggaggccgtggtggcggt ggaatgatgggaggtcgcggcggtggaatgagaggcggcggcggtagaagtggtggtggtggagggggtggtttcggagg tggaaacagatttggaggaggtggtggaggcggcttcggcaatcgtcgaggcggcggaggacaaggaggaggaatgaggg gaggaagttttggagatgattttagtttcaaccgtggacaaggtggaagcggtggtggatttggcggcggaatgggcagc ggtggaggtggaatgggtggaggaatgggaggcggaatgggcggaggaaacatgggaggtggaaatatgggaggaggttt tggtagcgacaattttggcggtgacaacttcggaggcggagatggttttgatgatagctatgataactatggaggcatgc agaattttgcacaggatagcggtgtaagttaa |
|
Protein
| Protein ID | pfu_aug1.0_4996.1_01875.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4996.1_01875.t1 MPPDKVLHYKNYRDDDFDCEMRLLVHQSQAGCIIGRAGFKIKELREKTGSQIKVYSQCCPESTERVVAIGGKPKVVVDTI ETIHDLLQTAPPKGPSQPYDPLYWDEFMVPEYGGYSASEGGRGKGGPRGAPPSGRMGGMGGGMGGMRGGRGGMMGGRGGG GMMGGRGGGMRGGGGRSGGGGGGGFGGGNRFGGGGGGGFGNRRGGGGQGGGMRGGSFGDDFSFNRGQGGSGGGFGGGMGS GGGGMGGGMGGGMGGGNMGGGNMGGGFGSDNFGGDNFGGGDGFDDSYDNYGGMQNFAQDSGVS |
|