Gene
| Gene Model ID | pfu_aug1.0_501.1_50899 |
|---|---|
| Locus | scaffold501.1 : 19694 ... 29055 : - |
| To GenomeBrowser | scaffold501.1:19694..29055 |
| Genes list of scaffold | scaffold501.1 |
| Synonym | pfu_aug2.0_620.1_00959 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | chitotriosidase-like protein |
| Description | chitotriosidase-like protein, best hit to BLAST XP_003474729.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_501.1_50899.t1 | 1 | 1 | Glyco_hydro_18 | 29 | 371 | 0.0 | 311.5 | 0.0 | 0.0 | 311.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_501.1_50899.t1 | gi|348577915|ref|XP_003474729.1| | PREDICTED: chitotriosidase-1 [Cavia porcellus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_501.1_50899.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_501.1_50899.t1 atgtcatataatatccaactgttattattcatcttcctcgtttcgttgattgaattcatagttaacggaaatgagttcat gcgagtatgctacttcacaaactggtcaagcaaacgaaagtacgtggcgagtcgttttcagctaggagacatcgatccca acctatgtactcatttggtttacgcatttgcaactatcaatcccaataaaagaatacttaaaaaaactgaaacagacgat gacaacgggtcactggacaataaacaaggaagatatttcgaatttacgaaactgaaggagaaatatccacatctgaagac gatgctttctgtaggggggcagaatacaaaggggctgtttgagggaaaaatggactcgtccgcttctatcagacagtttg cagacaatatacggatttatctaaaagaccgaaattttgacggagttgatattgattgggaatatccagcaaagttctat aaagacagatttacagaattcttaagggctctaagagaggattttgatcaatatgcacaagagggacatcccagactgtt actgagtatagccgctgccccgggtaaagatgacatagactcgtcctatgacgtagcgcaaatatccagatatgtagact ttataaacgtcatggcgtatgattactatggtcaatggagtcacagcgcaggatacaatagtcccctgtattcaacagat ccaacatcaactctatcacagaattggacaattaactactacatgcgcctaggagcaccgccacataaacttgtactggg aataaacgccgctgctgttggcctcaccctgaaggatgcctcggacaataagcccggggcacctgtcatcaatgggggcg tacccaaggggccgatactggaggtcccagggcgacgaagttatcaagagatgtgttctttactgcgaaccagctggttt tcaacacattgggaccaaggacatgccatgacttatgctctaaaaggaaatcagtggttcggatacgaaacagaaagaag tgtaaaaactaaggtggaatatgccatgaacttaggacttggtggtgtgatgttttggtctctcgacatcgatgatttta cagggaactactgtaagcgtggacggtatcccttacttacagcaatagctaagacaagccaagagtataaaccaataata acaacaactcagaccacgaaaaagccaaccacaaagacacagccaattacctcatcgcatcctttacttacagcaatagc taagacaagccaagagtataaaccaataataacaacaactcagaccacgaaaaagccaaccacaaagacacagccaatta cctcatcgcaatctcgaaacagttctactgtaaaaacagcatcagcgggaaatgcaagtttaaattcttcacaatcgcac gagacattttctgtccaaacaacaacagagagtaaagaagtgttcgaaacaacgcaacctcacgtgacatttcccgtaca aacaacgcccgagaaaaggggagggttcagaatgttctacgtcattgactctgcgtcaaactctaaatcttcctgtgtaa ttgtgttttgtttgttattcgttatacacatatttattagatga |
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Protein
| Protein ID | pfu_aug1.0_501.1_50899.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_501.1_50899.t1 MSYNIQLLLFIFLVSLIEFIVNGNEFMRVCYFTNWSSKRKYVASRFQLGDIDPNLCTHLVYAFATINPNKRILKKTETDD DNGSLDNKQGRYFEFTKLKEKYPHLKTMLSVGGQNTKGLFEGKMDSSASIRQFADNIRIYLKDRNFDGVDIDWEYPAKFY KDRFTEFLRALREDFDQYAQEGHPRLLLSIAAAPGKDDIDSSYDVAQISRYVDFINVMAYDYYGQWSHSAGYNSPLYSTD PTSTLSQNWTINYYMRLGAPPHKLVLGINAAAVGLTLKDASDNKPGAPVINGGVPKGPILEVPGRRSYQEMCSLLRTSWF STHWDQGHAMTYALKGNQWFGYETERSVKTKVEYAMNLGLGGVMFWSLDIDDFTGNYCKRGRYPLLTAIAKTSQEYKPII TTTQTTKKPTTKTQPITSSHPLLTAIAKTSQEYKPIITTTQTTKKPTTKTQPITSSQSRNSSTVKTASAGNASLNSSQSH ETFSVQTTTESKEVFETTQPHVTFPVQTTPEKRGGFRMFYVIDSASNSKSSCVIVFCLLFVIHIFIR |
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