Gene
Gene Model ID | pfu_aug1.0_501.1_50899 |
---|---|
Locus | scaffold501.1 : 19694 ... 29055 : - |
To GenomeBrowser | scaffold501.1:19694..29055 |
Genes list of scaffold | scaffold501.1 |
Synonym | pfu_aug2.0_620.1_00959 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | chitotriosidase-like protein |
Description | chitotriosidase-like protein, best hit to BLAST XP_003474729.1 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_501.1_50899.t1 | 1 | 1 | Glyco_hydro_18 | 29 | 371 | 0.0 | 311.5 | 0.0 | 0.0 | 311.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_501.1_50899.t1 | gi|348577915|ref|XP_003474729.1| | PREDICTED: chitotriosidase-1 [Cavia porcellus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_501.1_50899.t1 |
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Definition | - |
>pfu_aug1.0_501.1_50899.t1 atgtcatataatatccaactgttattattcatcttcctcgtttcgttgattgaattcatagttaacggaaatgagttcat gcgagtatgctacttcacaaactggtcaagcaaacgaaagtacgtggcgagtcgttttcagctaggagacatcgatccca acctatgtactcatttggtttacgcatttgcaactatcaatcccaataaaagaatacttaaaaaaactgaaacagacgat gacaacgggtcactggacaataaacaaggaagatatttcgaatttacgaaactgaaggagaaatatccacatctgaagac gatgctttctgtaggggggcagaatacaaaggggctgtttgagggaaaaatggactcgtccgcttctatcagacagtttg cagacaatatacggatttatctaaaagaccgaaattttgacggagttgatattgattgggaatatccagcaaagttctat aaagacagatttacagaattcttaagggctctaagagaggattttgatcaatatgcacaagagggacatcccagactgtt actgagtatagccgctgccccgggtaaagatgacatagactcgtcctatgacgtagcgcaaatatccagatatgtagact ttataaacgtcatggcgtatgattactatggtcaatggagtcacagcgcaggatacaatagtcccctgtattcaacagat ccaacatcaactctatcacagaattggacaattaactactacatgcgcctaggagcaccgccacataaacttgtactggg aataaacgccgctgctgttggcctcaccctgaaggatgcctcggacaataagcccggggcacctgtcatcaatgggggcg tacccaaggggccgatactggaggtcccagggcgacgaagttatcaagagatgtgttctttactgcgaaccagctggttt tcaacacattgggaccaaggacatgccatgacttatgctctaaaaggaaatcagtggttcggatacgaaacagaaagaag tgtaaaaactaaggtggaatatgccatgaacttaggacttggtggtgtgatgttttggtctctcgacatcgatgatttta cagggaactactgtaagcgtggacggtatcccttacttacagcaatagctaagacaagccaagagtataaaccaataata acaacaactcagaccacgaaaaagccaaccacaaagacacagccaattacctcatcgcatcctttacttacagcaatagc taagacaagccaagagtataaaccaataataacaacaactcagaccacgaaaaagccaaccacaaagacacagccaatta cctcatcgcaatctcgaaacagttctactgtaaaaacagcatcagcgggaaatgcaagtttaaattcttcacaatcgcac gagacattttctgtccaaacaacaacagagagtaaagaagtgttcgaaacaacgcaacctcacgtgacatttcccgtaca aacaacgcccgagaaaaggggagggttcagaatgttctacgtcattgactctgcgtcaaactctaaatcttcctgtgtaa ttgtgttttgtttgttattcgttatacacatatttattagatga |
Protein
Protein ID | pfu_aug1.0_501.1_50899.t1 |
---|---|
Definition | - |
>pfu_aug1.0_501.1_50899.t1 MSYNIQLLLFIFLVSLIEFIVNGNEFMRVCYFTNWSSKRKYVASRFQLGDIDPNLCTHLVYAFATINPNKRILKKTETDD DNGSLDNKQGRYFEFTKLKEKYPHLKTMLSVGGQNTKGLFEGKMDSSASIRQFADNIRIYLKDRNFDGVDIDWEYPAKFY KDRFTEFLRALREDFDQYAQEGHPRLLLSIAAAPGKDDIDSSYDVAQISRYVDFINVMAYDYYGQWSHSAGYNSPLYSTD PTSTLSQNWTINYYMRLGAPPHKLVLGINAAAVGLTLKDASDNKPGAPVINGGVPKGPILEVPGRRSYQEMCSLLRTSWF STHWDQGHAMTYALKGNQWFGYETERSVKTKVEYAMNLGLGGVMFWSLDIDDFTGNYCKRGRYPLLTAIAKTSQEYKPII TTTQTTKKPTTKTQPITSSHPLLTAIAKTSQEYKPIITTTQTTKKPTTKTQPITSSQSRNSSTVKTASAGNASLNSSQSH ETFSVQTTTESKEVFETTQPHVTFPVQTTPEKRGGFRMFYVIDSASNSKSSCVIVFCLLFVIHIFIR |