Gene
| Gene Model ID | pfu_aug1.0_501.1_50902 |
|---|---|
| Locus | scaffold501.1 : 34326 ... 45574 : + |
| To GenomeBrowser | scaffold501.1:34326..45574 |
| Genes list of scaffold | scaffold501.1 |
| Synonym | pfu_aug2.0_620.1_00960 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_501.1_50902.t1 | 1 | 1 | Collagen | 2 | 54 | 2.0e-08 | 33.6 | 4.4e-12 | 3.2e-08 | 32.9 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_501.1_50902.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_501.1_50902.t1 atgggaggaagaggagaaaggggagacaacggtgaagcgggtaaacaaggcccggaaggtgttcaaggctacccagggta caccgggcgtatgggtgttcgaggtaaccccggaatgccgggagatcaaggggccatgggaagacaagggtaccaagggg ccactagatacttccgtgtagcatacgcacccatggtatacgctccagtaagatcaaagggacccgctcaagcaccagtg tacgcaccggtcagagctaaggcgccagcgcctgtgagagtggtgtacgcgcccatgagagcaaagggacccgcaccagt atacgcaccgcagtacaaatatgctccggcaccaagacctgtgaaagcctttggtgagactgtattttggctgggaggcg acgattacttgttcgaaggggtgtggcgctgggaagagaccggaggacccgttgtttccttcacaaaatgggccccggga tatccaacaaacagcagcgacaccaactgtctgggaatggtgtttgtggacacagaactgatgtggaaggacatgacatg cggatcaagtcaccatggaaaacgacaagcaaccactgtaagaccaacgaaacatcacaaagtaacgcatgcgcatcgta cacatccgccgtcaccgaaccattactatatctgcgagaagcaggccttccactctgctccagtcattggttaa |
|
Protein
| Protein ID | pfu_aug1.0_501.1_50902.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_501.1_50902.t1 MGGRGERGDNGEAGKQGPEGVQGYPGYTGRMGVRGNPGMPGDQGAMGRQGYQGATRYFRVAYAPMVYAPVRSKGPAQAPV YAPVRAKAPAPVRVVYAPMRAKGPAPVYAPQYKYAPAPRPVKAFGETVFWLGGDDYLFEGVWRWEETGGPVVSFTKWAPG YPTNSSDTNCLGMVFVDTELMWKDMTCGSSHHGKRQATTVRPTKHHKVTHAHRTHPPSPNHYYICEKQAFHSAPVIG |
|