Gene
| Gene Model ID | pfu_aug1.0_5030.1_30850 |
|---|---|
| Locus | scaffold5030.1 : 44446 ... 46564 : + |
| To GenomeBrowser | scaffold5030.1:44446..46564 |
| Genes list of scaffold | scaffold5030.1 |
| Synonym | pfu_aug2.0_2114.1_15414 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5030.1_30850.t1 | 3 | 1 | zf-RING_5 | 13 | 62 | 5.5e-06 | 25.9 | 4.1e-09 | 5.5e-06 | 25.9 |
| pfu_aug1.0_5030.1_30850.t1 | 1 | 1 | zf-C3HC4 | 14 | 61 | 8.3e-07 | 28.5 | 6.1e-10 | 8.3e-07 | 28.5 |
| pfu_aug1.0_5030.1_30850.t1 | 2 | 1 | zf-C3HC4_2 | 14 | 61 | 1.3e-06 | 28.3 | 9.7e-10 | 1.3e-06 | 28.3 |
| pfu_aug1.0_5030.1_30850.t1 | 3 | 2 | zf-RING_5 | 104 | 135 | 5.5e-06 | 25.9 | 0.052 | 70.0 | 3.2 |
| pfu_aug1.0_5030.1_30850.t1 | 3 | 3 | zf-RING_5 | 166 | 191 | 5.5e-06 | 25.9 | 0.46 | 620.0 | 0.2 |
| pfu_aug1.0_5030.1_30850.t1 | 2 | 2 | zf-C3HC4_2 | 167 | 193 | 1.3e-06 | 28.3 | 0.78 | 1100.0 | -0.3 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5030.1_30850.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5030.1_30850.t1 atggcttcctccattgaagcacaattggatttgactcgttgctcgatttgctttgagatttttaatttacccaaacagct tccatgtctacatagtttctgtgaggtttgcttacagtcgtatatcacggaagtgtttaacaaagactctacaaatacaa agggaattcattgtccgatttgtagagctttcatcgacaaaccagatgatcaagtctttcgagactggggtaaaactttt cctacgaatcatctgatgaacaatattattgattatacaaagtctaaaaacgaaaacgaaagtaaatattgcaacgtctg tgaaagagaaaacgaaagtaaagctgcatcacattggtgtgtgaattgctgtgatgccttgtgtagtccatgcgagcgtc agcacagaaggttcaaaacaacagctctacataagcttgtagaaattggcaagatgaaagaatcggaatctgaagggctg ctgtatggtgctgaagtattttgtgaagaacatagaagcgaaagtgtacgcttttattgcgccgaccataaaagggtttg ttgcatgacgtgtatgatgttacgtcatcgtaaatgtgatgacgttgggtccgtcgaagatggagcaaagaccacgaaga cttctaaagaggtcaaagaattaaaaacagatttgaaaggcttgaaaatacaatttgaggaacttgtgaagaacagggaa gaaaacattcagagcttcacagcccatcttgcacagaccgaagacaacattgagacgtcattgaatgaactgataaacca tttcaaaaccacgaaaaccgaaatcctagaggaacttggagcaaagaaaaaagaaattattccacaattacaggatgaaa aatcagagcttgagtgcaaagttgccgggatagcaaatgatctcgctatctttgaatccacctctctccatgcaccgcca gcacagtatcttcaaaccgtgagaagtttacaagagcaacgagagaaactggaaattgaactgaagaaacaaagaggtca gttgagaaactataatctggagtacaaaagaaatgaaactttagatagtattaagaagactgcaaatctcttcggaactg tttcagttttgcaaacagatgttcctctcgggaccgaacatgtaataaaggaagagattaatacaaatggtgagacacga atagaattaaagaatagaatagaggtagaaggcaacgttaaaggggtggcttttgttgatgatagccgtatcattggatc atgcagaggaaaaacattgactcttttccataccaatggaaccatgatcaattcagtagtgttctccgataaaatttggt cagtacgtatgaaaaatcaccacgaaggggctgtcgtacttttaaataattatctacagtttttcaaagtttcaaggaat gatattattctcactactaagcttgaacattatacaatggactttgcctttataaacgagaagcatatattcataggccg tagtgggatcaacattctggatgacacattacgtccagtgcaagaaatctctgttgaacatgaagtagggtacatggacc tccgtgatgttcactctatttgttacacagtttattgtggggatgctttgtattgtgtggatctagatggaaaacagcta ttttcttacactcacgaaaagttacaacagacaaccggtattatggtggattcgcgtggacaaatatacgtttgtggttt caaatccagaaatatccaccagttgaatcacgagggacaactgcagacaatcatctttgaagacctacctggtccgtact gtatatgtttcaacgataaagaagataaagtcgctattggatgttatcaatgtgtcctattatatgacttttgttga |
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Protein
| Protein ID | pfu_aug1.0_5030.1_30850.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5030.1_30850.t1 MASSIEAQLDLTRCSICFEIFNLPKQLPCLHSFCEVCLQSYITEVFNKDSTNTKGIHCPICRAFIDKPDDQVFRDWGKTF PTNHLMNNIIDYTKSKNENESKYCNVCERENESKAASHWCVNCCDALCSPCERQHRRFKTTALHKLVEIGKMKESESEGL LYGAEVFCEEHRSESVRFYCADHKRVCCMTCMMLRHRKCDDVGSVEDGAKTTKTSKEVKELKTDLKGLKIQFEELVKNRE ENIQSFTAHLAQTEDNIETSLNELINHFKTTKTEILEELGAKKKEIIPQLQDEKSELECKVAGIANDLAIFESTSLHAPP AQYLQTVRSLQEQREKLEIELKKQRGQLRNYNLEYKRNETLDSIKKTANLFGTVSVLQTDVPLGTEHVIKEEINTNGETR IELKNRIEVEGNVKGVAFVDDSRIIGSCRGKTLTLFHTNGTMINSVVFSDKIWSVRMKNHHEGAVVLLNNYLQFFKVSRN DIILTTKLEHYTMDFAFINEKHIFIGRSGINILDDTLRPVQEISVEHEVGYMDLRDVHSICYTVYCGDALYCVDLDGKQL FSYTHEKLQQTTGIMVDSRGQIYVCGFKSRNIHQLNHEGQLQTIIFEDLPGPYCICFNDKEDKVAIGCYQCVLLYDFC |
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