Gene
| Gene Model ID | pfu_aug1.0_50466.1_63381 |
|---|---|
| Locus | scaffold50466.1 : 336 ... 4318 : + |
| To GenomeBrowser | scaffold50466.1:336..4318 |
| Genes list of scaffold | scaffold50466.1 |
| Synonym | pfu_aug2.0_297.1_23822 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_50466.1_63381.t1 | 1 | 1 | ERG4_ERG24 | 2 | 245 | 0.0 | 275.4 | 0.0 | 0.0 | 275.3 |
| pfu_aug1.0_50466.1_63381.t1 | 2 | 1 | DUF1295 | 19 | 54 | 3.0e-07 | 30.0 | 0.13 | 280.0 | 0.6 |
| pfu_aug1.0_50466.1_63381.t1 | 2 | 2 | DUF1295 | 133 | 193 | 3.0e-07 | 30.0 | 2.7e-10 | 5.7e-07 | 29.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_50466.1_63381.t1 | gi|149040902|gb|EDL94859.1| | rCG20089 [Rattus norvegicus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_50466.1_63381.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_50466.1_63381.t1 atgttctatgattggtttatcggcagagaattaaatccaagaatcggaagccttgatctcaaatacgtcatgttcagaag tggtattacaggatggataattctcaacaccatattcgtattggaggcacagggttctataacaacagtactttgtctta tatggctgatgcagttcatttacgtcgcagactatttctggtttgaggaggggcttatagtgtcacgtgacatagtgcat gaaggactgggattcaacatttccctgcagtttgttatgattccgtttacgtttatcacacaatcccggtacctccaagt gatgacgtactccccgtcacttactcatatggcttctgtgctgctcctttatgcacttggctattacatatatagagcaa gcaattcagagaaaaataatttcagaaagaatccaaatgacaaaaatcttgcacatctgaagacaatgccgacagaatcc ggacggaagcttttgatctcaggctggtggggactatgtaggcaccctaactaccttggtgacctgatgatatcccttag ctacgcacttatgacaggtttcaatcatttcttgccgtatgtcaactttatatttctcgttatgctcctgcttgatcgtg aacaacgtgatagcgatgagtgtcagaggaaatacgggaaagactggaataaatattgccaacatgtaaaatacaggata attccatttgtgtattag |
|
Protein
| Protein ID | pfu_aug1.0_50466.1_63381.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_50466.1_63381.t1 MFYDWFIGRELNPRIGSLDLKYVMFRSGITGWIILNTIFVLEAQGSITTVLCLIWLMQFIYVADYFWFEEGLIVSRDIVH EGLGFNISLQFVMIPFTFITQSRYLQVMTYSPSLTHMASVLLLYALGYYIYRASNSEKNNFRKNPNDKNLAHLKTMPTES GRKLLISGWWGLCRHPNYLGDLMISLSYALMTGFNHFLPYVNFIFLVMLLLDREQRDSDECQRKYGKDWNKYCQHVKYRI IPFVY |
|