Gene
| Gene Model ID | pfu_aug1.0_5053.1_38046 |
|---|---|
| Locus | scaffold5053.1 : 6962 ... 22615 : - |
| To GenomeBrowser | scaffold5053.1:6962..22615 |
| Genes list of scaffold | scaffold5053.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5053.1_38046.t1 | 1 | 1 | zf-CW | 330 | 364 | 5.4e-08 | 32.4 | 8.4e-12 | 1.3e-07 | 31.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5053.1_38046.t1 | gi|260841248|ref|XP_002613840.1| | hypothetical protein BRAFLDRAFT_72038 [Branchiostoma floridae] | 4.0e-11 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5053.1_38046.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5053.1_38046.t1 atgtttaacactgagtcaatgaagaatgtcgacgacgaaattcagacagaagatgtagaaaggaaaacaactgataccaa tgataaggagcaagacccaggatcgacatatgacaatgtggtaactgagtccacagactttctgtacactccacttgatg atatatttagagaattacagaaggaaccaaaaccagtcaaggcttccaaattaaaggcaaagccagcattgtctgtagat gctttggctgaagcaaagaaatcaaagaaacacaagataacggaaaaagaaggcaatctacaattacagaaatcgaaaaa ggccaagccaacattgtcagtggatgctgtggctgataaaaagaaacacaagataccagaaaacgaaggatgtttacaaa aactgaaaccaaaaaaggcaaaagtttccaaaggcagtgaatttgatagatctgatattgataaaacagaaactaaggat gattttgcacagaaggaaacaaatatatcagacagtgttgtcagtacagaggtcaacctgacaaaatctgaaaataaaga taatacagaaatggagacagaatcaacctctgaggaggcaaacaaacaaaacttgatggaggaggaaaggactcaatttg ccatacaacagatgaatgagataacgcctgaaggaagtgagcatgataatgtgtcatctgataccaaaataaagcaaatg tctcctcctcctaaaaagaagaaaaaatctttatgtccgcctaagaaaaaagaacagaaattagaacccaagaagttgcc gttttctgtcaaacttaagggtaaaaaagatgtccaaaaatcaagacaaaaagggaaaagagtacagaaggatatgcctg catgtacacttgcttcaccacatacagatagtgttaaaagtcctgtgggatccaaaaaacaaagcaagaagaatattatg ttaaatagggatatcatatcatacgggacctgggtgcagtgttgtgataagacatgcagtaaatggagatacctggctga catagatgatccatctgtattaccagaggtctggtactgttatatgagtaatggtacgatggactga |
|
Protein
| Protein ID | pfu_aug1.0_5053.1_38046.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5053.1_38046.t1 MFNTESMKNVDDEIQTEDVERKTTDTNDKEQDPGSTYDNVVTESTDFLYTPLDDIFRELQKEPKPVKASKLKAKPALSVD ALAEAKKSKKHKITEKEGNLQLQKSKKAKPTLSVDAVADKKKHKIPENEGCLQKLKPKKAKVSKGSEFDRSDIDKTETKD DFAQKETNISDSVVSTEVNLTKSENKDNTEMETESTSEEANKQNLMEEERTQFAIQQMNEITPEGSEHDNVSSDTKIKQM SPPPKKKKKSLCPPKKKEQKLEPKKLPFSVKLKGKKDVQKSRQKGKRVQKDMPACTLASPHTDSVKSPVGSKKQSKKNIM LNRDIISYGTWVQCCDKTCSKWRYLADIDDPSVLPEVWYCYMSNGTMD |
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