Gene
| Gene Model ID | pfu_aug1.0_5053.1_38047 |
|---|---|
| Locus | scaffold5053.1 : 22786 ... 29045 : + |
| To GenomeBrowser | scaffold5053.1:22786..29045 |
| Genes list of scaffold | scaffold5053.1 |
| Synonym | pfu_aug2.0_121.1_03660 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5053.1_38047.t1 | 2 | 1 | Methyltransf_31 | 352 | 398 | 1.8e-09 | 37.3 | 5.5e-11 | 5.5e-08 | 32.5 |
| pfu_aug1.0_5053.1_38047.t1 | 1 | 1 | Methyltransf_18 | 352 | 453 | 3.8e-09 | 37.1 | 6.9e-12 | 6.8e-09 | 36.2 |
| pfu_aug1.0_5053.1_38047.t1 | 2 | 2 | Methyltransf_31 | 430 | 456 | 1.8e-09 | 37.3 | 0.097 | 96.0 | 2.5 |
| pfu_aug1.0_5053.1_38047.t1 | 1 | 1 | Bin3 | 440 | 493 | 1.6e-09 | 37.7 | 4.0e-12 | 3.9e-09 | 36.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5053.1_38047.t1 | gi|198431421|ref|XP_002129700.1| | PREDICTED: 7SK snRNA methylphosphate capping enzyme-like [Ciona intestinalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5053.1_38047.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5053.1_38047.t1 atgagtgtggaggtaaagactccgacacggactcagtttgaacattctgagttccagtgtggtgaaaagagttcaaattt tgaggaagtaggaacacaaaagagtgtgaaattcaatgaaaaatctgacagtttccatagatttgaaagtagtgcaaaat tccagtacagaaagaggaaacctagctatagaaatgagcacagtcagcaaattggagggtttcgcaggaaaagggcgaag tcaatgcccgctgcagagagtaacattgtattgccaacgaaatttttactcggtggaaatatcaacgaccctctaaattt gaacagtttgaacaatgaggaggtgaataaacttcttaatcaaactccacagtcgtcgccgatcgttactccacccactt ttcagagtttcagtgttccagtgccatttaatatcacggacccattaaatttagaatctggagatgattcaattagtaaa aagaaaaaacgcaacaagcatcacctgcacaaaaggaaaagcgacgatagtcacaatagtagtgcaaatacacatccaaa taaagaaacagaaaggcggaaaagtgttttggaggcattaaagattgaagttgatgatgatgaacttcccacactatctt caactatttcatcttctgatcaaaaacctctcgagatccacttttcttcaaaaccagttgttgacaaaattgtttcacca gttattccacaaatttctccctcgagtagagccaaaaagagaaagcgtgccatgagtatgagtgatgccagaccagaaaa gtcccacatcgcacgttctattttaagaacatctcttagtccaccaagaaatagtgctcttcacattgaccttgaaaaga ccacttcaccagttaaacgtttcaaaaaacaaggttcacagaaacatgtgcttccaaaatatcagaaaaacccaaaattc agccatggaaattacaataggtattatgggtatcgaaatcctgatgcagaacatgatcaaaggttaatctgtttcaaaaa ggattggttcgaaggaaaggatgttttagatattggatgcaatgttggccacatcacgctggccataggcaaagattttc aacctcggaaaattgtaggattggatattgacaaaaaactcatcaaagcagcaaggaaaaatgttcgatattatatgtct gaccaatcaaaccagacagagaagtttcctgtatccagctccctgaactttggtccaatagaggcgccacctgtttgtga tcaaaatcagcgttattttccaaagaatgttatgttcattcaagaggatatccacaagcattttcagagtattcagctaa agccggcccagttctcagactatctcctcagagaagttggcttctcaacgtgtgaagtagtggatgtaccgttacataaa gctaaaggatttcgacgaccaatccagttgtacactaaagccgacactgctgtatgcagtcccaaggaggagtccgctag ctgcagtccaaatgctgtaaccatggaaacaagtgctaatgttgctaaggaccaatcagagaaagttgattcaacagctg acaagaagactgaggaaaaccaggggacgaaggatgtcaacgtatag |
|
Protein
| Protein ID | pfu_aug1.0_5053.1_38047.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5053.1_38047.t1 MSVEVKTPTRTQFEHSEFQCGEKSSNFEEVGTQKSVKFNEKSDSFHRFESSAKFQYRKRKPSYRNEHSQQIGGFRRKRAK SMPAAESNIVLPTKFLLGGNINDPLNLNSLNNEEVNKLLNQTPQSSPIVTPPTFQSFSVPVPFNITDPLNLESGDDSISK KKKRNKHHLHKRKSDDSHNSSANTHPNKETERRKSVLEALKIEVDDDELPTLSSTISSSDQKPLEIHFSSKPVVDKIVSP VIPQISPSSRAKKRKRAMSMSDARPEKSHIARSILRTSLSPPRNSALHIDLEKTTSPVKRFKKQGSQKHVLPKYQKNPKF SHGNYNRYYGYRNPDAEHDQRLICFKKDWFEGKDVLDIGCNVGHITLAIGKDFQPRKIVGLDIDKKLIKAARKNVRYYMS DQSNQTEKFPVSSSLNFGPIEAPPVCDQNQRYFPKNVMFIQEDIHKHFQSIQLKPAQFSDYLLREVGFSTCEVVDVPLHK AKGFRRPIQLYTKADTAVCSPKEESASCSPNAVTMETSANVAKDQSEKVDSTADKKTEENQGTKDVNV |
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