Gene
| Gene Model ID | pfu_aug1.0_5055.1_67151 |
|---|---|
| Locus | scaffold5055.1 : 11846 ... 41582 : + |
| To GenomeBrowser | scaffold5055.1:11846..41582 |
| Genes list of scaffold | scaffold5055.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5055.1_67151.t1 | 5 | 1 | Cadherin | 50 | 149 | 0.0 | 154.9 | 2.6e-06 | 0.038 | 14.2 |
| pfu_aug1.0_5055.1_67151.t1 | 5 | 2 | Cadherin | 168 | 246 | 0.0 | 154.9 | 8.3e-19 | 1.2e-14 | 54.2 |
| pfu_aug1.0_5055.1_67151.t1 | 5 | 3 | Cadherin | 286 | 361 | 0.0 | 154.9 | 1.5e-06 | 0.022 | 15.0 |
| pfu_aug1.0_5055.1_67151.t1 | 5 | 4 | Cadherin | 342 | 401 | 0.0 | 154.9 | 9.4e-12 | 1.4e-07 | 31.6 |
| pfu_aug1.0_5055.1_67151.t1 | 5 | 5 | Cadherin | 416 | 481 | 0.0 | 154.9 | 1.3e-16 | 2.0e-12 | 47.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5055.1_67151.t1 | gi|260828412|ref|XP_002609157.1| | hypothetical protein BRAFLDRAFT_249059 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_5055.1_67151.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5055.1_67151.t1 atgggaggtcacaggtcaagatggtggaggtcaaggacattaattctgaagtacacgtggattgtcctgctatgtatcct ggatctctcagcttccaccctctcgctgaccatcaaccaagaggacttccggttcacacagaagctttacaatgccacaa taccggaaatggcaccaggcaaaacatttgtcaaatcagaaaagaagatgggaatattcatatccgatccaaaaataagt gtgatatacaagatagaggatggtgataagtctggaatattcaagtgtgaggaagtgcgagtgggcgacttcgtatttct gagagtgagaacactttcaaacagttttggaagtttaaatcgcgaactcgagagtcgctaccaccttaaaataaaagcta tagggcaaataagtcaagggaattctgtgactaccacaatagatctcattatcagtgtgttagacaaaaatgatctctac ccacttttcgacaaggatgtgtacaacacgacaattagcgaagatacagacttgttcacgagtgtgcttactgtttccgc ttctgacggagacgtcggtgtgaattctgacatatactacaggtttgtccaaaagacgaacgcttttgctatacatccta cctcaggggtgataactcttacacgacgcttagattatttcgtccaaagtcgttataactttgacgtagtcgctgaggat aggggaccaaagtctcgggggcacaatggtttcgttagcagatttgccaaaatcactatcttggtctcgcgggccaattt tttctctcctcaaatttcgttcaaacgcttgccaattttggaggatagtggacaagaaaacggacatgcgggtattgtgt atgcaatcatgagtgtaacagacgatgacatcgatgtaaatggaaaaattgactctgtgagaatcttagaagacgcttca gggagctttaaaatatttccaacaaatgatatcgaacaatatgagcttgctctggttaaaaagctcaccgagtcaaaaat ttcaaacaattttgacattgtgatagaggccactgacagaggaacaattcgaaccagcaaggttttggatcgggaaacga cagatcattattggctgactgtgtacgccactgaccgcggtatcgtccctctgcatgcgcgcctcgaggtttacatcaag gtgattgatgtcaatgataacgtcccccaattttacaagcccgtatattacatggaggtggaggaaaactcatccccggg acgtgtggtcgggcaggtccaggcctacgacaaggacgacaaccctactcaggaactcagttactccatcacagacagcg acagtaccggaggtttcgccatcaacagcatcaccggggtcattgctacaacgaagaaaagacttgaccgggatagtgaa cattcccaacggattatcgagtctctggatggacgagaggaagacctaaaaaggaccatcttaaattggtttttttcatc tgaaaggtttgataacgttatcgcagtgtctcaagattatattgtcaatatcgggataaatggcgacgaggaaaagtga |
|
Protein
| Protein ID | pfu_aug1.0_5055.1_67151.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5055.1_67151.t1 MGGHRSRWWRSRTLILKYTWIVLLCILDLSASTLSLTINQEDFRFTQKLYNATIPEMAPGKTFVKSEKKMGIFISDPKIS VIYKIEDGDKSGIFKCEEVRVGDFVFLRVRTLSNSFGSLNRELESRYHLKIKAIGQISQGNSVTTTIDLIISVLDKNDLY PLFDKDVYNTTISEDTDLFTSVLTVSASDGDVGVNSDIYYRFVQKTNAFAIHPTSGVITLTRRLDYFVQSRYNFDVVAED RGPKSRGHNGFVSRFAKITILVSRANFFSPQISFKRLPILEDSGQENGHAGIVYAIMSVTDDDIDVNGKIDSVRILEDAS GSFKIFPTNDIEQYELALVKKLTESKISNNFDIVIEATDRGTIRTSKVLDRETTDHYWLTVYATDRGIVPLHARLEVYIK VIDVNDNVPQFYKPVYYMEVEENSSPGRVVGQVQAYDKDDNPTQELSYSITDSDSTGGFAINSITGVIATTKKRLDRDSE HSQRIIESLDGREEDLKRTILNWFFSSERFDNVIAVSQDYIVNIGINGDEEK |
|