Gene
| Gene Model ID | pfu_aug1.0_5055.1_67152 |
|---|---|
| Locus | scaffold5055.1 : 43396 ... 64343 : + |
| To GenomeBrowser | scaffold5055.1:43396..64343 |
| Genes list of scaffold | scaffold5055.1 |
| Synonym | pfu_aug2.0_81.1_03564 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5055.1_67152.t1 | 12 | 1 | Cadherin | 39 | 100 | 0.0 | 541.9 | 1.3e-08 | 3.9e-05 | 23.8 |
| pfu_aug1.0_5055.1_67152.t1 | 12 | 2 | Cadherin | 129 | 213 | 0.0 | 541.9 | 1.4e-10 | 4.3e-07 | 30.1 |
| pfu_aug1.0_5055.1_67152.t1 | 12 | 3 | Cadherin | 234 | 318 | 0.0 | 541.9 | 2.3e-17 | 6.7e-14 | 51.9 |
| pfu_aug1.0_5055.1_67152.t1 | 6 | 1 | Cadherin_2 | 263 | 286 | 1.1e-11 | 44.1 | 0.59 | 1800.0 | -1.4 |
| pfu_aug1.0_5055.1_67152.t1 | 12 | 4 | Cadherin | 331 | 417 | 0.0 | 541.9 | 5.7e-17 | 1.7e-13 | 50.6 |
| pfu_aug1.0_5055.1_67152.t1 | 12 | 5 | Cadherin | 433 | 524 | 0.0 | 541.9 | 1.9e-20 | 5.5e-17 | 61.7 |
| pfu_aug1.0_5055.1_67152.t1 | 6 | 2 | Cadherin_2 | 437 | 496 | 1.1e-11 | 44.1 | 0.0017 | 5.1 | 6.7 |
| pfu_aug1.0_5055.1_67152.t1 | 12 | 6 | Cadherin | 557 | 645 | 0.0 | 541.9 | 1.7e-22 | 4.9e-19 | 68.3 |
| pfu_aug1.0_5055.1_67152.t1 | 6 | 3 | Cadherin_2 | 590 | 623 | 1.1e-11 | 44.1 | 0.00077 | 2.3 | 7.8 |
| pfu_aug1.0_5055.1_67152.t1 | 12 | 7 | Cadherin | 660 | 754 | 0.0 | 541.9 | 7.7e-18 | 2.3e-14 | 53.4 |
| pfu_aug1.0_5055.1_67152.t1 | 12 | 8 | Cadherin | 768 | 856 | 0.0 | 541.9 | 8.8e-08 | 0.00026 | 21.1 |
| pfu_aug1.0_5055.1_67152.t1 | 12 | 9 | Cadherin | 871 | 970 | 0.0 | 541.9 | 2.4e-12 | 7.1e-09 | 35.7 |
| pfu_aug1.0_5055.1_67152.t1 | 12 | 10 | Cadherin | 985 | 1070 | 0.0 | 541.9 | 4.8e-20 | 1.4e-16 | 60.4 |
| pfu_aug1.0_5055.1_67152.t1 | 6 | 4 | Cadherin_2 | 1030 | 1045 | 1.1e-11 | 44.1 | 0.43 | 1300.0 | -1.0 |
| pfu_aug1.0_5055.1_67152.t1 | 12 | 11 | Cadherin | 1087 | 1173 | 0.0 | 541.9 | 1.0e-18 | 3.1e-15 | 56.2 |
| pfu_aug1.0_5055.1_67152.t1 | 6 | 5 | Cadherin_2 | 1121 | 1151 | 1.1e-11 | 44.1 | 5.3e-05 | 0.16 | 11.5 |
| pfu_aug1.0_5055.1_67152.t1 | 6 | 6 | Cadherin_2 | 1188 | 1248 | 1.1e-11 | 44.1 | 0.00053 | 1.6 | 8.3 |
| pfu_aug1.0_5055.1_67152.t1 | 12 | 12 | Cadherin | 1190 | 1262 | 0.0 | 541.9 | 8.0e-17 | 2.4e-13 | 50.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5055.1_67152.t1 | gi|260828414|ref|XP_002609158.1| | hypothetical protein BRAFLDRAFT_131370 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_5055.1_67152.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5055.1_67152.t1 atgggaattttgaagaatttatataacattaatgagccggcaattctgaaaatattttttggagtggaacagttacctac gttccacggcactgtttggttaccaactgctgcaaatgtacctgtgatagccattaaggctgtggatcctgacactaaga ctacggagggcctgaaattttcactcactgatggtgatcatgagaagttcctaatagatcaaactactggaatgatttat gtcaaaaatgagacaaacatggcagcaaagtatgaccttaaagtaacagcatctgatggaaagtttgacacctcagttga cgttataatttcgatatctcaacagagtaagtctggtctcaccctctcgcagcaagaaatgcaagtagcagtgaaagaga atctgaattttacccaattactcactgtaattcaagtccctcactcactgaatcaacatttagtttttacgttgctgaac tatcaggacaagttttctatcgtaaggtcatcaggggtcctgcagactaaggggatacctctggaccgtgaagaccaggc catgtatagactgatagtgctggtagaggaccttagtgactcgtcacgtattgcacatatcttggtgaaggtaaccgtag aggaccagaatgacaatgctcctacctttgtcaacttgccttatgataccgtggtacctatcgatgctgatgttggtacc actataagacaggcgacggctattgacagagaccaaggtagtaatggtgaggttgtcttcagtttgtcccagggatatgg ggatcattttgaagtagatactgactcaggaaaaattacaattctcaataaacttagtgattcagatgtcaacaaggaga tggtactgatagtccaggcacaagataaaggtacccccagcctgactagcacagtctttgtcaacatcaggatcatcagc agttcacacccagtgttccccacccactattacacaaccacagtaagagaggacattcccccagggtcccccattttcag tgtgaacgcaacctccccgattggccataaactcatctactctatagcaagtggcgacccctacaaggaatttgatgttg atttcaatctaggtgtaataaaggtcacaagtaacttggactatgagtcaacacaggaatacaacttgaccatccgagcc tccgatgtaaagactggttcatatgctgaagccaaacttaatctcaaggtcatggatgtgaatgatcagaggccttcctt ttcacattacaagtacacatctgttttatcagaagcagtccccataggaacaactgttaccatagtaacagcctctgacc ttgacacagggctgaattcacttgttcactatgacattatacctgttcaggaccagcttgcaccatattttgagatagac tcccaaagtggacttataacgacatatcaaccgttagatcatgaaagtaatcaagagttcaatatcatcgtcacggctac agatgcagggctaccagcaaatactgcctatgttcctgttcacattattattactgaccttaacgataatcctccatatt ttgatcagccttcttacaattgcttcattactgatcagacagccagcctcattgtaaccaagcaagtataccagaccagt atactggagaatgtcggagaggggatgcttgttgtcacggtaacagctaccgatgaggacagagggaattatgggatgct gacatacactatactcagtgatgagatgaggaaacactttacaatcgatgccgatacaggtgaggtgtacgcagctcaga gttttgaccgtgaggaacagggtcagtactcggtaactgtagctgtcactgataacggaggacgaatgggcttcaccata ttaaatgtcgacataacagatataaacgacaatgttccgcaattctccatgagggaatacaaagctaatgtggcagctaa tgctacagtagggaacaaaatcatacagatccaggctacagatgctgatttaggtcaatcaggtcatgtgacgtatgaaa tgcattctgggaatctcgtcaatgcaggggaattattcgctcttgataccaatactggattcatcagcgtaaagcagaat ctctctgctcatgcaaatcaagttttccaattcttcgtaacggcaactgaccatggacaaactcaacttaaaaatacagt accagttgagatctacgttttaacaagcgatcaatctccaccattggtaaaaccccacaacagctttgtcattccatctg aagaaatggtgggtaccgtcatcggcaccatagtggcactgggcagtgattctttagattatagtattatatccggattt ttacctatgcacaatagcgaagacgtgttctctattgatagcacagggcaaattagacttatggagaagtggaaggaaag taaactgccaaagtatgagttttctgtaaaggtccagtctaagaataaccctcgactatttgcgtacagtgaagttgaag ttgtcgtcagtaatcttgattcaagccgtcctgagtttgaggctcatgagtatgacgttacacttgcggaaaactcagag gtgagaactaaggtagtgaggtgcagaatgctggactctggtaagacttttgccaacgtaaggtacaagtttgatgacca taccatcagggcttatgaaaatatgtttgccattgacccgttcagtggctggatnttcagtggctggatcactcttgaat cagaggctgatagggaaaaacaagatttctacaacctcactgtcattgcggaaacgaagggcagtgcaaagaaaagcttg aatacaaccgtagtcaacatagaaattaccgatcataacgataatcctccaatatttagccagagtcactatatagcggc agtgaatgaggacgcactaactggaactatactaatgaccttgagtacacatgatgccgacatcaaaccaaacacagatg ttgagtatttagttgtagagggcgatccaatgggtaaattcaaagttcacagatcaggagaaatctacgtgtctaaaatt ctggatagagaaacacaggccagatatgaaattctaattgctgctactgatggaggaatggcttccatggcaaccattac catagatattctggatgcaaatgacaacacccctgtctgtgaacagccactacatcaggttgttttgtcggaggatgtcg agcctaacactttgatcacacagataaaggccacggatgctgacgacagaatgacaccaaacgctgtgatacagtatcga ctaaaaggagataatactttgttccaggtcaacaaagagaaaggtgtattgacaaactcggtacaactagacagagagaa tatggcagagcaccatcttataattagtgccgtggacggagatggaaagtcatgtgacactgaggtctacattgagcttt ctgacgttaacgataatccacctgcctttgttgatctacccactgaatactctataccggaatctacagaggttgacacc ttgatcatgagggtttacacctttgacccagatttaggtatcaataggcaagtgaaatacaaactgaagaatgattctga cggaacgtttagtattaatgaggaatctggaatcctgaagctagagaaggctgttgacagagaggtcaaacctaaacata ctcttgtattgacagcttatgaccaggatgtgtactttggtgctgaggtggatattaattttggtggttaccatgacata cgccgaggatttgacggttgtatggaggacattaagctgtttaacgtacgactaccgtttgacggacagaatgctgtggt actgaacccagagttcaaagatgtggaattccattgtaaagatacattcccaggcattgatggaaccatgcctcccttga cgaaattacgtatcgacgaatataaatatatatgtactcttgacaaaatatag |
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Protein
| Protein ID | pfu_aug1.0_5055.1_67152.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5055.1_67152.t1 MGILKNLYNINEPAILKIFFGVEQLPTFHGTVWLPTAANVPVIAIKAVDPDTKTTEGLKFSLTDGDHEKFLIDQTTGMIY VKNETNMAAKYDLKVTASDGKFDTSVDVIISISQQSKSGLTLSQQEMQVAVKENLNFTQLLTVIQVPHSLNQHLVFTLLN YQDKFSIVRSSGVLQTKGIPLDREDQAMYRLIVLVEDLSDSSRIAHILVKVTVEDQNDNAPTFVNLPYDTVVPIDADVGT TIRQATAIDRDQGSNGEVVFSLSQGYGDHFEVDTDSGKITILNKLSDSDVNKEMVLIVQAQDKGTPSLTSTVFVNIRIIS SSHPVFPTHYYTTTVREDIPPGSPIFSVNATSPIGHKLIYSIASGDPYKEFDVDFNLGVIKVTSNLDYESTQEYNLTIRA SDVKTGSYAEAKLNLKVMDVNDQRPSFSHYKYTSVLSEAVPIGTTVTIVTASDLDTGLNSLVHYDIIPVQDQLAPYFEID SQSGLITTYQPLDHESNQEFNIIVTATDAGLPANTAYVPVHIIITDLNDNPPYFDQPSYNCFITDQTASLIVTKQVYQTS ILENVGEGMLVVTVTATDEDRGNYGMLTYTILSDEMRKHFTIDADTGEVYAAQSFDREEQGQYSVTVAVTDNGGRMGFTI LNVDITDINDNVPQFSMREYKANVAANATVGNKIIQIQATDADLGQSGHVTYEMHSGNLVNAGELFALDTNTGFISVKQN LSAHANQVFQFFVTATDHGQTQLKNTVPVEIYVLTSDQSPPLVKPHNSFVIPSEEMVGTVIGTIVALGSDSLDYSIISGF LPMHNSEDVFSIDSTGQIRLMEKWKESKLPKYEFSVKVQSKNNPRLFAYSEVEVVVSNLDSSRPEFEAHEYDVTLAENSE VRTKVVRCRMLDSGKTFANVRYKFDDHTIRAYENMFAIDPFSGWXFSGWITLESEADREKQDFYNLTVIAETKGSAKKSL NTTVVNIEITDHNDNPPIFSQSHYIAAVNEDALTGTILMTLSTHDADIKPNTDVEYLVVEGDPMGKFKVHRSGEIYVSKI LDRETQARYEILIAATDGGMASMATITIDILDANDNTPVCEQPLHQVVLSEDVEPNTLITQIKATDADDRMTPNAVIQYR LKGDNTLFQVNKEKGVLTNSVQLDRENMAEHHLIISAVDGDGKSCDTEVYIELSDVNDNPPAFVDLPTEYSIPESTEVDT LIMRVYTFDPDLGINRQVKYKLKNDSDGTFSINEESGILKLEKAVDREVKPKHTLVLTAYDQDVYFGAEVDINFGGYHDI RRGFDGCMEDIKLFNVRLPFDGQNAVVLNPEFKDVEFHCKDTFPGIDGTMPPLTKLRIDEYKYICTLDKI |
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