Gene
| Gene Model ID | pfu_aug1.0_50872.1_63389 |
|---|---|
| Locus | scaffold50872.1 : 1 ... 4149 : - |
| To GenomeBrowser | scaffold50872.1:1..4149 |
| Genes list of scaffold | scaffold50872.1 |
| Synonym | NA |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | titin |
| Description | Titin partial sequence. BLASTP hit to JH167841 (Heterocephalus glaber). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_50872.1_63389.t1 | 5 | 1 | SusE | 25 | 64 | 2.6e-09 | 36.9 | 9.6e-05 | 0.2 | 11.4 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 1 | fn3 | 29 | 111 | 0.0 | 269.3 | 3.2e-22 | 6.8e-19 | 67.7 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 1 | Tissue_fac | 29 | 111 | 3.8e-12 | 45.8 | 2.4e-05 | 0.05 | 13.3 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 2 | fn3 | 130 | 211 | 0.0 | 269.3 | 3.1e-20 | 6.5e-17 | 61.4 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 2 | SusE | 143 | 207 | 2.6e-09 | 36.9 | 0.0023 | 5.0 | 6.9 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 2 | Tissue_fac | 147 | 205 | 3.8e-12 | 45.8 | 0.00018 | 0.38 | 10.5 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 3 | fn3 | 231 | 312 | 0.0 | 269.3 | 3.5e-18 | 7.3e-15 | 54.8 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 3 | SusE | 237 | 289 | 2.6e-09 | 36.9 | 0.00085 | 1.8 | 8.3 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 3 | Tissue_fac | 247 | 283 | 3.8e-12 | 45.8 | 0.024 | 50.0 | 3.6 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 4 | fn3 | 331 | 414 | 0.0 | 269.3 | 2.0e-17 | 4.2e-14 | 52.4 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 4 | SusE | 342 | 374 | 2.6e-09 | 36.9 | 0.68 | 1400.0 | -1.0 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 4 | Tissue_fac | 346 | 413 | 3.8e-12 | 45.8 | 0.00016 | 0.33 | 10.7 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 5 | SusE | 421 | 488 | 2.6e-09 | 36.9 | 0.0016 | 3.3 | 7.5 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 5 | fn3 | 431 | 515 | 0.0 | 269.3 | 1.9e-13 | 4.1e-10 | 39.6 |
| pfu_aug1.0_50872.1_63389.t1 | 5 | 5 | Tissue_fac | 432 | 512 | 3.8e-12 | 45.8 | 0.12 | 260.0 | 1.3 |
Transcript
| Transcript ID | pfu_aug1.0_50872.1_63389.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_50872.1_63389.t1 atggccgaaaatgatgttggaacatctaagcctctggagatggacaaaccattcaaagcagagagcccctacaaagttcc aactgcaccacgaaatcttaaagccgcagatctgactgaatcatcattgaccttgacctgggaaccaccacagaatgatg gtggcgcccccatcactcagtacaccgtagaacgacgagataagaaatacggcccatacacgcaggaagcagtcgtcaaa gcgccatctacttcctgtcttgtagagaggctgagagagggtcctgagtattatttcagagtgacggctacaaatgaaga aggaacgagtccagcagtggatctacctcagcctgttaaactggttaaaaaaccagttgcacctgaaagtccagtaggac caatcaagttctctcatgtcaccgctaacggtctacagctccaatggcaaccaagcaggaaagatggtggatcaccgatc actggatacagagtagagatgactactgaccaaaacgtatggacagaaatcatcgtctgtgatgagaacaccacacagat caagcttgatgacctcgatacaggagcaacctacaccttcagggtctcggccctcaataaagttggtgctagtgcaccat tggtgtctgacaaagtcgttccttctaaaccaatcggcccaccaggacaaccagaatctcctctgactgcaaatgtgttg tcaagggaatctgttgagttgtcatggcaaccaccaaaagaagacggaggttctcctataaccaattacgtgattgagaa acatgacgccaaacgaacaacttggtccagggtagagaaatcagacgacaaaacaaaacttaccgtcaaaagtctggttg agggtgcggagtttttcttccgtgtggctgctataaataaacatggacagggtgaattcttggaaatgaataaacctgtt ctagtgaaaagtccatttgacaagccatctcaaccaaaaggaccattaaaaacatcaaacctcaccgagaccacggtaga tctacaatggcgaccatcagagagtgacggtggatcacctctcctacactatgtgatagaggtcagagaatcccgcagga agacttggggacgagctggtaccgttacacctgacacgactaaatataccgccaaaagtcttgtcatcaacaacgaatat ttcttcagaatccgtgccgttaatgcagaaggggagagcactcctctggaatcagatagtgtcacaccaaagaaacaaat cagttgtccagatgccccagcatcattaactgtcaagagcatcacagaaaaagactgtgagattgaatggcgtcccccgc gtcatgatggcggtgcccgcgtcaagcagtaccacatcttcaccatgacgacggacttccaggatagctgggctgaggta gccaccactgacgctttccgcacaaatcatgtcgtgacacgacttaaacatgataaggagtattattttgctgtgtcggc agaaaacgagaaaggcacaggagaaaaggcagcaacagagaagccagtagccctgaaacaaccaatcagttag |
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Protein
| Protein ID | pfu_aug1.0_50872.1_63389.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_50872.1_63389.t1 MAENDVGTSKPLEMDKPFKAESPYKVPTAPRNLKAADLTESSLTLTWEPPQNDGGAPITQYTVERRDKKYGPYTQEAVVK APSTSCLVERLREGPEYYFRVTATNEEGTSPAVDLPQPVKLVKKPVAPESPVGPIKFSHVTANGLQLQWQPSRKDGGSPI TGYRVEMTTDQNVWTEIIVCDENTTQIKLDDLDTGATYTFRVSALNKVGASAPLVSDKVVPSKPIGPPGQPESPLTANVL SRESVELSWQPPKEDGGSPITNYVIEKHDAKRTTWSRVEKSDDKTKLTVKSLVEGAEFFFRVAAINKHGQGEFLEMNKPV LVKSPFDKPSQPKGPLKTSNLTETTVDLQWRPSESDGGSPLLHYVIEVRESRRKTWGRAGTVTPDTTKYTAKSLVINNEY FFRIRAVNAEGESTPLESDSVTPKKQISCPDAPASLTVKSITEKDCEIEWRPPRHDGGARVKQYHIFTMTTDFQDSWAEV ATTDAFRTNHVVTRLKHDKEYYFAVSAENEKGTGEKAATEKPVALKQPIS |
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