Gene
| Gene Model ID | pfu_aug1.0_5106.1_38063 |
|---|---|
| Locus | scaffold5106.1 : 15566 ... 18749 : + |
| To GenomeBrowser | scaffold5106.1:15566..18749 |
| Genes list of scaffold | scaffold5106.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5106.1_38063.t1 | 1 | 1 | EF-hand_7 | 73 | 132 | 7.2e-06 | 26.0 | 6.2e-09 | 1.3e-05 | 25.2 |
| pfu_aug1.0_5106.1_38063.t1 | 2 | 1 | EF-hand_1 | 73 | 100 | 7.9e-06 | 24.8 | 2.3e-06 | 0.0049 | 16.0 |
| pfu_aug1.0_5106.1_38063.t1 | 2 | 2 | EF-hand_1 | 122 | 134 | 7.9e-06 | 24.8 | 0.002 | 4.2 | 6.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5106.1_38063.t1 | gi|260813529|ref|XP_002601470.1| | hypothetical protein BRAFLDRAFT_271463 [Branchiostoma floridae] | 4.0e-25 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| egg-4cell | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5106.1_38063.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5106.1_38063.t1 atgaatancgtactgaaatacatggaggaccacaaatcacaattcccagaacaaacaatccagaccctaagagaaagatt aggacagaccaggcaggaaaaagaaatgataaagggtggacccatgaaggtcaggaggaatgatggtgaccttgatatcc tggtgagacaagtaagagctcagctgaagaagattgccatcacggataagacgcgtgtagacgagatgttcctccgttat aacaaagataggacaggttttattgatgccaacaatatgaggaatttatgccgtagtctacaactgccggtagatgatga tgttatcaatgctctgattgcacagtgtaccacagatccagagggcaagatctcattagaagatttcagaaaatttgtgg aaagttcatga |
|
Protein
| Protein ID | pfu_aug1.0_5106.1_38063.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5106.1_38063.t1 MNXVLKYMEDHKSQFPEQTIQTLRERLGQTRQEKEMIKGGPMKVRRNDGDLDILVRQVRAQLKKIAITDKTRVDEMFLRY NKDRTGFIDANNMRNLCRSLQLPVDDDVINALIAQCTTDPEGKISLEDFRKFVESS |
|