Gene
| Gene Model ID | pfu_aug1.0_5106.1_38065 |
|---|---|
| Locus | scaffold5106.1 : 34996 ... 50873 : + |
| To GenomeBrowser | scaffold5106.1:34996..50873 |
| Genes list of scaffold | scaffold5106.1 |
| Synonym | pfu_aug2.0_829.1_31202 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5106.1_38065.t1 | 1 | 1 | Ras | 39 | 175 | 6.4e-33 | 113.4 | 2.4e-36 | 8.8e-33 | 112.9 |
| pfu_aug1.0_5106.1_38065.t1 | 1 | 1 | Miro | 39 | 146 | 3.0e-13 | 50.3 | 1.1e-16 | 4.0e-13 | 49.8 |
| pfu_aug1.0_5106.1_38065.t1 | 1 | 1 | Arf | 41 | 157 | 1.1e-11 | 44.3 | 3.5e-15 | 1.3e-11 | 44.0 |
| pfu_aug1.0_5106.1_38065.t1 | 1 | 1 | GTP_EFTU | 58 | 148 | 2.2e-06 | 27.2 | 7.1e-10 | 2.6e-06 | 26.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5106.1_38065.t1 | gi|260788053|ref|XP_002589065.1| | hypothetical protein BRAFLDRAFT_213951 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5106.1_38065.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5106.1_38065.t1 atgacatcacacttgacggtgtacgctactatttggagcggaatgacatcatttgatatttcttgtgggcaaaatcttcc tacgaagagaaaagtgaaccgaaccgatattagcagctgtatcatcaaaagatattgtgagaaaagatttgttcacaagt acctgacaacgataggtattgactatggagttaccagagtatcaataaaggatcgtgatgtgaaggtgaatatctttgat atggctggacatccaatattttatgaggtacgcaatgagttttacaaggacacacagggtgctatcttggtgtacgatgt cgcagatcgtcagagttttgaagccctcgatgcctggatgacagagatgcagaatgagatcggcaatcagtcagaaatgg acaatgttgttgtgtgtgtttgtgcaaataagtgtgacaagaagcgtactgtggatgaagcagaggggagagtttgggct gatgcacgaggatttcactattttgaaacttcagcccagacagaactcgcctggtgtaaaatctccaacaaacttccagt gcgctaa |
|
Protein
| Protein ID | pfu_aug1.0_5106.1_38065.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5106.1_38065.t1 MTSHLTVYATIWSGMTSFDISCGQNLPTKRKVNRTDISSCIIKRYCEKRFVHKYLTTIGIDYGVTRVSIKDRDVKVNIFD MAGHPIFYEVRNEFYKDTQGAILVYDVADRQSFEALDAWMTEMQNEIGNQSEMDNVVVCVCANKCDKKRTVDEAEGRVWA DARGFHYFETSAQTELAWCKISNKLPVR |
|