Gene
| Gene Model ID | pfu_aug1.0_5132.1_67171 |
|---|---|
| Locus | scaffold5132.1 : 26556 ... 46557 : + |
| To GenomeBrowser | scaffold5132.1:26556..46557 |
| Genes list of scaffold | scaffold5132.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5132.1_67171.t1 | 4 | 1 | LRR_8 | 52 | 101 | 2.2e-36 | 123.4 | 2.6e-08 | 4.8e-05 | 23.0 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 1 | LRR_1 | 67 | 87 | 4.8e-17 | 59.3 | 0.0099 | 18.0 | 5.8 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 1 | LRR_6 | 67 | 77 | 3.9e-11 | 41.8 | 0.51 | 940.0 | 0.4 |
| pfu_aug1.0_5132.1_67171.t1 | 4 | 2 | LRR_8 | 68 | 125 | 2.2e-36 | 123.4 | 9.2e-14 | 1.7e-10 | 40.4 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 1 | LRR_4 | 68 | 104 | 1.8e-30 | 104.0 | 1.5e-08 | 2.8e-05 | 23.6 |
| pfu_aug1.0_5132.1_67171.t1 | 1 | 1 | LRR_5 | 78 | 185 | 1.2e-10 | 41.2 | 1.1e-13 | 2.1e-10 | 40.4 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 2 | LRR_6 | 88 | 102 | 3.9e-11 | 41.8 | 7.1e-05 | 0.13 | 12.3 |
| pfu_aug1.0_5132.1_67171.t1 | 4 | 3 | LRR_8 | 89 | 149 | 2.2e-36 | 123.4 | 2.0e-15 | 3.8e-12 | 45.7 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 2 | LRR_4 | 89 | 129 | 1.8e-30 | 104.0 | 1.4e-12 | 2.6e-09 | 36.4 |
| pfu_aug1.0_5132.1_67171.t1 | 4 | 1 | LRR_7 | 89 | 104 | 3.0e-10 | 38.5 | 0.00057 | 1.1 | 9.8 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 2 | LRR_1 | 90 | 110 | 4.8e-17 | 59.3 | 5.0e-06 | 0.0093 | 15.8 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 3 | LRR_6 | 112 | 128 | 3.9e-11 | 41.8 | 9.8e-06 | 0.018 | 15.0 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 3 | LRR_4 | 113 | 154 | 1.8e-30 | 104.0 | 3.9e-10 | 7.1e-07 | 28.7 |
| pfu_aug1.0_5132.1_67171.t1 | 4 | 2 | LRR_7 | 113 | 128 | 3.0e-10 | 38.5 | 0.0001 | 0.19 | 12.0 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 3 | LRR_1 | 114 | 135 | 4.8e-17 | 59.3 | 4.1e-06 | 0.0076 | 16.1 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 4 | LRR_6 | 137 | 151 | 3.9e-11 | 41.8 | 0.0012 | 2.2 | 8.5 |
| pfu_aug1.0_5132.1_67171.t1 | 4 | 3 | LRR_7 | 137 | 152 | 3.0e-10 | 38.5 | 0.003 | 5.6 | 7.6 |
| pfu_aug1.0_5132.1_67171.t1 | 4 | 4 | LRR_8 | 138 | 190 | 2.2e-36 | 123.4 | 1.1e-15 | 2.1e-12 | 46.5 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 4 | LRR_4 | 138 | 177 | 1.8e-30 | 104.0 | 1.8e-12 | 3.4e-09 | 36.1 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 4 | LRR_1 | 138 | 160 | 4.8e-17 | 59.3 | 0.00018 | 0.34 | 11.1 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 5 | LRR_6 | 160 | 177 | 3.9e-11 | 41.8 | 3.2e-05 | 0.06 | 13.4 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 5 | LRR_4 | 162 | 190 | 1.8e-30 | 104.0 | 2.4e-08 | 4.4e-05 | 22.9 |
| pfu_aug1.0_5132.1_67171.t1 | 5 | 5 | LRR_1 | 162 | 184 | 4.8e-17 | 59.3 | 1.8e-06 | 0.0033 | 17.2 |
| pfu_aug1.0_5132.1_67171.t1 | 4 | 4 | LRR_7 | 162 | 176 | 3.0e-10 | 38.5 | 8.9e-05 | 0.17 | 12.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5132.1_67171.t1 | gi|70955672|gb|AAZ16397.1| | variable lymphocyte receptor B [Eptatretus stoutii] | 2.0e-19 |
Transcript
| Transcript ID | pfu_aug1.0_5132.1_67171.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5132.1_67171.t1 atgctcagattgtcagtgggaattctgttggtcagtttgtccgtcttgtgtggcggggcgcatgcccagtgtacgccctg tccgtcggcatgtacatgtactcacatcgcgggaacggcggacgactgtacagttaactgcaccaatggtaacattgagt ggatacccacctccagtgaattacccacggccaacgatatcagaatattggacatgtctttcaacatcatagaagaagtt tacagatcagattttcaagatatgacgaacctgcgagaagtagatttgtctaataataaaatcacagaatttcatcgttc aacattttccactaataccagactcacccatctagatgttagtaataatcaaattagctctctagacagcgacatatttg atagcaacggaaatctagaatatctaatcatgggtaacaatcaaataacagggctgtcaaatgacgtgtttgatcaattg agtaaacttacgtacctagatttgggtaataatgccatcactagtctaagttccagtatattttcttcgctaacaagact tgagacgctgtga |
|
Protein
| Protein ID | pfu_aug1.0_5132.1_67171.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5132.1_67171.t1 MLRLSVGILLVSLSVLCGGAHAQCTPCPSACTCTHIAGTADDCTVNCTNGNIEWIPTSSELPTANDIRILDMSFNIIEEV YRSDFQDMTNLREVDLSNNKITEFHRSTFSTNTRLTHLDVSNNQISSLDSDIFDSNGNLEYLIMGNNQITGLSNDVFDQL SKLTYLDLGNNAITSLSSSIFSSLTRLETL |
|