Gene
| Gene Model ID | pfu_aug1.0_5170.1_67185 |
|---|---|
| Locus | scaffold5170.1 : 18856 ... 40569 : + |
| To GenomeBrowser | scaffold5170.1:18856..40569 |
| Genes list of scaffold | scaffold5170.1 |
| Synonym | pfu_aug2.0_74.1_13546 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5170.1_67185.t1 | 3 | 1 | Apc3 | 36 | 86 | 5.2e-06 | 26.4 | 0.00055 | 0.58 | 10.3 |
| pfu_aug1.0_5170.1_67185.t1 | 3 | 1 | TPR_19 | 41 | 78 | 5.5e-06 | 26.6 | 0.89 | 940.0 | 0.2 |
| pfu_aug1.0_5170.1_67185.t1 | 3 | 2 | Apc3 | 314 | 367 | 5.2e-06 | 26.4 | 0.00039 | 0.42 | 10.7 |
| pfu_aug1.0_5170.1_67185.t1 | 3 | 1 | TPR_11 | 316 | 366 | 8.7e-07 | 28.5 | 6.8e-05 | 0.072 | 12.7 |
| pfu_aug1.0_5170.1_67185.t1 | 4 | 1 | TPR_2 | 317 | 347 | 5.9e-09 | 35.1 | 0.016 | 17.0 | 5.6 |
| pfu_aug1.0_5170.1_67185.t1 | 3 | 1 | TPR_14 | 317 | 358 | 5.9e-08 | 32.6 | 0.0076 | 8.1 | 7.3 |
| pfu_aug1.0_5170.1_67185.t1 | 3 | 2 | TPR_19 | 328 | 361 | 5.5e-06 | 26.6 | 0.012 | 13.0 | 6.1 |
| pfu_aug1.0_5170.1_67185.t1 | 3 | 3 | Apc3 | 398 | 459 | 5.2e-06 | 26.4 | 0.00035 | 0.37 | 10.9 |
| pfu_aug1.0_5170.1_67185.t1 | 4 | 2 | TPR_2 | 400 | 414 | 5.9e-09 | 35.1 | 0.6 | 640.0 | 0.7 |
| pfu_aug1.0_5170.1_67185.t1 | 3 | 2 | TPR_14 | 421 | 454 | 5.9e-08 | 32.6 | 6.8e-05 | 0.072 | 13.7 |
| pfu_aug1.0_5170.1_67185.t1 | 3 | 2 | TPR_11 | 426 | 479 | 8.7e-07 | 28.5 | 0.00014 | 0.15 | 11.6 |
| pfu_aug1.0_5170.1_67185.t1 | 4 | 3 | TPR_2 | 428 | 449 | 5.9e-09 | 35.1 | 0.00021 | 0.23 | 11.4 |
| pfu_aug1.0_5170.1_67185.t1 | 3 | 3 | TPR_19 | 428 | 456 | 5.5e-06 | 26.6 | 8.0e-06 | 0.0085 | 16.4 |
| pfu_aug1.0_5170.1_67185.t1 | 4 | 4 | TPR_2 | 529 | 555 | 5.9e-09 | 35.1 | 0.00079 | 0.84 | 9.7 |
| pfu_aug1.0_5170.1_67185.t1 | 3 | 3 | TPR_14 | 529 | 556 | 5.9e-08 | 32.6 | 0.1 | 110.0 | 3.8 |
| pfu_aug1.0_5170.1_67185.t1 | 3 | 3 | TPR_11 | 534 | 557 | 8.7e-07 | 28.5 | 0.014 | 14.0 | 5.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5170.1_67185.t1 | gi|307206445|gb|EFN84483.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5170.1_67185.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5170.1_67185.t1 atgcatacagacttctacgtgaacttcattactgctgaaagtaaactagaagactttgtggagcagaatatgccattaga gaaaaacatcctaaaagcaaaatcagaactagacgatgtagaaactatcctacgtaatttgagtcaaaaacagagtaaga taacagtggagtccaaacttctgcttgccaaggttctgtattgtaagggatcccaccaagctgtactagatatctacgat aaactcggcttggattctctttgtaaggacaatataccacccaggctgttacagctcatagcggaggcttacgctatcaa aggattttgcctggaagcaataggaccaagttccaccagtaagttcaagattgctgaacaggaggaaaaagtgacagagt gttacgagagagcaggggatcttgcgttactgagtcaacaagaacgggaaaaagctatgttaagctcctcaggaggagtg gtcagagaggagatgggaggaatactagagtctgctatccaacaatcacctcttatgtatataaaacatggagagatctc taaagctgttggtagatttagagagttgctcagagttatagagtcaagatttacccagagtctgcgtcaggttgagacta gtgttgtaaaatcggaaaaattttactatcgattatcggaaactatcggaggagtacaatcgataatacaatcagacctt tttggccggattgcaaagcaaaatccggtctataaaatgccaaagtctgctactagagaagctgttctgaacagatctga agagcacaaagaagcacggcagcacagttttggcaatgcaacagcagtttatgacttactagctataactctagtcaaaa gagcacaatttttaaagttgtccgagtcctttgagaaggcaatgagattctcatatgatgaattccatatttggcaccaa tttgccaatgcccttatatgtgccggaaagtatagccgtgcattattagtgcttaaggagtgctccttggtgagacccga caacacggtggttctgctacaggcagcaaaactctgctatgaatatctacaccaggagtactatgaaaatgatatctttt tggaagatgacaatatcatatttcagagaaaagcggaaaaacagggtgctctggatttagtgaacaggacaataagtgag gccatcaagtacactcgcctcgccctacgatacagaaacgatcacatacattctctccacctcctcgtgctcctctttac ggcccagaaaaagtatgaggaggctatgtccctgattaaggcggctctggaggagtaccctgacaacctcagcctcctcc tcaccaggtgtaagctggaagaggtcctacagggacctgaggttgccttggttacatgtaaacatatgctgcagttatgg aaggatctgtatgaaaatgactccgatgtagatgaaatctcatcagagcgaccaagtcgccctcccacagctaacgacag gtctacatttgacagacgaagttttgcacagctacaactcagtgaatgtactgatagggacacggggcgagttcaagagc ataagcagcattttgttgatgccaaagcctcttatgagaatgcggtatctataaatccagctcataccaaatctttacaa catctggtaggtactaatggtaggaaatgttgtactagaaaaagaaaaggggatgatctccagcatgaccaccctgcacc caccctgcgaaacaaacccacaagaaagtga |
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Protein
| Protein ID | pfu_aug1.0_5170.1_67185.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5170.1_67185.t1 MHTDFYVNFITAESKLEDFVEQNMPLEKNILKAKSELDDVETILRNLSQKQSKITVESKLLLAKVLYCKGSHQAVLDIYD KLGLDSLCKDNIPPRLLQLIAEAYAIKGFCLEAIGPSSTSKFKIAEQEEKVTECYERAGDLALLSQQEREKAMLSSSGGV VREEMGGILESAIQQSPLMYIKHGEISKAVGRFRELLRVIESRFTQSLRQVETSVVKSEKFYYRLSETIGGVQSIIQSDL FGRIAKQNPVYKMPKSATREAVLNRSEEHKEARQHSFGNATAVYDLLAITLVKRAQFLKLSESFEKAMRFSYDEFHIWHQ FANALICAGKYSRALLVLKECSLVRPDNTVVLLQAAKLCYEYLHQEYYENDIFLEDDNIIFQRKAEKQGALDLVNRTISE AIKYTRLALRYRNDHIHSLHLLVLLFTAQKKYEEAMSLIKAALEEYPDNLSLLLTRCKLEEVLQGPEVALVTCKHMLQLW KDLYENDSDVDEISSERPSRPPTANDRSTFDRRSFAQLQLSECTDRDTGRVQEHKQHFVDAKASYENAVSINPAHTKSLQ HLVGTNGRKCCTRKRKGDDLQHDHPAPTLRNKPTRK |
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