Gene
| Gene Model ID | pfu_aug1.0_5177.1_45128 |
|---|---|
| Locus | scaffold5177.1 : 1 ... 4607 : + |
| To GenomeBrowser | scaffold5177.1:1..4607 |
| Genes list of scaffold | scaffold5177.1 |
| Synonym | pfu_aug2.0_213.1_10449 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5177.1_45128.t1 | 5 | 1 | WD40 | 14 | 24 | 1.3e-22 | 78.7 | 0.028 | 210.0 | 2.0 |
| pfu_aug1.0_5177.1_45128.t1 | 5 | 2 | WD40 | 42 | 74 | 1.3e-22 | 78.7 | 0.0019 | 14.0 | 5.7 |
| pfu_aug1.0_5177.1_45128.t1 | 5 | 3 | WD40 | 83 | 118 | 1.3e-22 | 78.7 | 1.8e-11 | 1.4e-07 | 31.1 |
| pfu_aug1.0_5177.1_45128.t1 | 5 | 4 | WD40 | 124 | 158 | 1.3e-22 | 78.7 | 5.4e-09 | 4.0e-05 | 23.3 |
| pfu_aug1.0_5177.1_45128.t1 | 5 | 5 | WD40 | 200 | 232 | 1.3e-22 | 78.7 | 6.0e-08 | 0.00045 | 20.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5177.1_45128.t1 | gi|149728200|ref|XP_001503690.1| | PREDICTED: protein TSSC1 [Equus caballus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 2 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5177.1_45128.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5177.1_45128.t1 tgtattatggcatccatcaggggagagcagtaaattgattggcctagctgataatcacatactactatgggatttcgatg tggcatcatcttcggcgaaactaaccagttcaactggcttagaaagtaagggtcactctaaattgacatgtggtcgatgg aatcctcatcataactgcacgcaaattgtaacagcaaatgatacagctatcaggggatgggatatcagatcaatgcaaca ggtatatacaatagataatgctcatggccagttggtgagagatttggattttaatcccaataagcagtattacttggtca gttgtggtgatgactgtaaaattaaattctgggatacaagaaacacaaaggaaaatctcaaagttctctcagaacattct cattgggtgtggtctattaagtataaccatttccatgatcagctgatcctatcctccagtagtgacagtcgggtcgtcct taataacattgtgtcattatcatctgaaccatacggacatctggtagacaatgaagatgatagtgatgatgaaagagagg atatagaaagaaccactgagcctccaaaagacggagtgatagctacttatgaggaacatgaagatagtgtctatgctgta gactggtcatcggcagatccatgggtgtttgcttcattaagttatgatggaagacttgttataaatagagtaccaagggc agaaaaatacaaaattctattgtag |
|
Protein
| Protein ID | pfu_aug1.0_5177.1_45128.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5177.1_45128.t1 VLWHPSGESSKLIGLADNHILLWDFDVASSSAKLTSSTGLESKGHSKLTCGRWNPHHNCTQIVTANDTAIRGWDIRSMQQ VYTIDNAHGQLVRDLDFNPNKQYYLVSCGDDCKIKFWDTRNTKENLKVLSEHSHWVWSIKYNHFHDQLILSSSSDSRVVL NNIVSLSSEPYGHLVDNEDDSDDEREDIERTTEPPKDGVIATYEEHEDSVYAVDWSSADPWVFASLSYDGRLVINRVPRA EKYKILL |
|