Gene
| Gene Model ID | pfu_aug1.0_5179.1_01921 |
|---|---|
| Locus | scaffold5179.1 : 325 ... 1891 : + |
| To GenomeBrowser | scaffold5179.1:325..1891 |
| Genes list of scaffold | scaffold5179.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5179.1_01921.t1 | 1 | 1 | Ribosomal_L7Ae | 3 | 74 | 4.0e-06 | 26.2 | 3.4e-10 | 5.1e-06 | 25.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5179.1_01921.t1 | gi|157278455|ref|NP_001098329.1| | growth arrest and DNA damage-inducible protein GADD45 alpha [Oryzias latipes] | 4.0e-12 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5179.1_01921.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5179.1_01921.t1 atggtcaccaaggccatggtggaaggaagaaccacgtgtggggtgatagcctgtgctcatcttctcaacacgaaccctga tgacgtcactctgtgcatcttgccagtggagacagacgaggacgtcaccatccacatccagcatacccttatagaggcat tctgctgggaaaacgatatagtgaccgttaaggttgatagtactgagaagcttggcatgttattctcagcccttggttcc actaactacaataacaacaacaaggtcgccgaggattacaattgtgtgctgatttcatgcccgcagacgaccgccacgga ccataccctgaacgacatcgtcaatgcagacgaccatccaatcatcgaaattcctgtcgactga |
|
Protein
| Protein ID | pfu_aug1.0_5179.1_01921.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5179.1_01921.t1 MVTKAMVEGRTTCGVIACAHLLNTNPDDVTLCILPVETDEDVTIHIQHTLIEAFCWENDIVTVKVDSTEKLGMLFSALGS TNYNNNNKVAEDYNCVLISCPQTTATDHTLNDIVNADDHPIIEIPVD |
|