Gene
Gene Model ID | pfu_aug1.0_5181.1_30887 |
---|---|
Locus | scaffold5181.1 : 14910 ... 45625 : - |
To GenomeBrowser | scaffold5181.1:14910..45625 |
Genes list of scaffold | scaffold5181.1 |
Synonym | pfu_aug2.0_40.1_00101 |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | lhx1/5 |
Description | highest Blast hit toGU169421.1 Platynereis dumerilii Lhx1/5 mRNA, partial cds |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5181.1_30887.t1 | 2 | 1 | LIM | 4 | 59 | 1.1e-32 | 111.8 | 1.2e-18 | 3.6e-15 | 55.7 |
pfu_aug1.0_5181.1_30887.t1 | 2 | 2 | LIM | 63 | 120 | 1.1e-32 | 111.8 | 1.7e-20 | 5.1e-17 | 61.6 |
pfu_aug1.0_5181.1_30887.t1 | 1 | 1 | Homeobox | 260 | 316 | 8.8e-20 | 70.0 | 6.0e-23 | 1.8e-19 | 69.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_5181.1_30887.t1 | gi|345132131|gb|AEN75258.1| | Lim1 [Neanthes arenaceodentata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_5181.1_30887.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5181.1_30887.t1 atggtgcaatgcgccgggtgcgacagacccattttggaccgatttttgttgaacgttttagatcgtgcttggcacacgaa atgtgtgcaatgttctgactgtaaaatgatccttacggacaagtgtttttctagggaaggaaaacttttttgccgaaatg actttttccggcgtttcggaacaaagtgcgccggttgttcgcagggaatttccccaaacgacctagtacggagagctaaa aataaagtttttcatcttaagtgttttacatgcataatatgtagaaaacagttgtccacgggagaggaactctacatcat ggacgaaaaccgattcatatgtaaagaagactatattagcagcaaattacaaggatcgtcggatttagatgaagatgaca tggatctggataacggattagagaaccagacatctttatcggataaagactttagtttagacgatgataattgtgcggac atcgatagcaaggagaacattctgaccagtattccaaacaacataaataacaacaacaacagcacaaatatgaataaaaa taactctatgaattccctgccacccagccccgacccaattaaggacgagacggcgctgttaaaaatttcctctgactcga accatagtagtcaaagttgtgatacgaacggtaattctattccgccaaatgccaatgtgaccacccctgatggcgacaga tcgggggaggaaattatagagggcggaggagggggctccggggctggggccaaaagaaggggaccaagaacgactataaa agcaaaacaattagaaactttaaaagcggcgtttgctgccaccccgaaacctacacgtcatatacgggaacagctggcac aagaaaccgggctcaacatgcgggttattcaggtttggtttcaaaatcgccgatcgaaagaaaggcgaatgaagcagctt agcgcactcggtgcaagaagacacttcttccgtaacccacggcgcatgcgcgccctccgggcagggatgtcgcccagcga actcgacgatagcgatatgatgggaggtccgggattcgggtatttttcagatcagatgcccggaagactaagcatcaaca accgtcgctttagccgtacagaaaaggtcaaaactggtggacttatcaaaatcggtggctcatcacaattgatggacata tcaaaactggtggacgtatcaaaacttttggatgtatcagaactggtgaacgtatcaaaactggtggatgtatcaaaact ggtggacgtatccaaactggtggacgtatcaaaacttttggacgtatcaaaactggtggacgtatcaaaattggtggacg tatcaaaactggtggacgtatcacaactggtggacatatcaaaactggtggacgtatcaaaattggtggacgtatcaaga ctggtggatgtatcaaaactggtggacgtatcaaaattggtggatatgtcaaaagtggcggacgtatcaaaactggtgga cgtatcaaaacttttggacgtatcaaaactggtggacatatcaaaactggtggacgtatcaaaacttttggatgtatcaa aactggtgaacgtatcaagactggtggatgtatcaaaactggtggacgtatcaaaactggtggacgtattaaaattgatg gacgtatcaaaagtttcggacgtatcaaaacttttggacgtatcaaaactggtggacatatga |
Protein
Protein ID | pfu_aug1.0_5181.1_30887.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5181.1_30887.t1 MVQCAGCDRPILDRFLLNVLDRAWHTKCVQCSDCKMILTDKCFSREGKLFCRNDFFRRFGTKCAGCSQGISPNDLVRRAK NKVFHLKCFTCIICRKQLSTGEELYIMDENRFICKEDYISSKLQGSSDLDEDDMDLDNGLENQTSLSDKDFSLDDDNCAD IDSKENILTSIPNNINNNNNSTNMNKNNSMNSLPPSPDPIKDETALLKISSDSNHSSQSCDTNGNSIPPNANVTTPDGDR SGEEIIEGGGGGSGAGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQL SALGARRHFFRNPRRMRALRAGMSPSELDDSDMMGGPGFGYFSDQMPGRLSINNRRFSRTEKVKTGGLIKIGGSSQLMDI SKLVDVSKLLDVSELVNVSKLVDVSKLVDVSKLVDVSKLLDVSKLVDVSKLVDVSKLVDVSQLVDISKLVDVSKLVDVSR LVDVSKLVDVSKLVDMSKVADVSKLVDVSKLLDVSKLVDISKLVDVSKLLDVSKLVNVSRLVDVSKLVDVSKLVDVLKLM DVSKVSDVSKLLDVSKLVDI |