Gene
| Gene Model ID | pfu_aug1.0_5181.1_30887 |
|---|---|
| Locus | scaffold5181.1 : 14910 ... 45625 : - |
| To GenomeBrowser | scaffold5181.1:14910..45625 |
| Genes list of scaffold | scaffold5181.1 |
| Synonym | pfu_aug2.0_40.1_00101 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | lhx1/5 |
| Description | highest Blast hit toGU169421.1 Platynereis dumerilii Lhx1/5 mRNA, partial cds |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5181.1_30887.t1 | 2 | 1 | LIM | 4 | 59 | 1.1e-32 | 111.8 | 1.2e-18 | 3.6e-15 | 55.7 |
| pfu_aug1.0_5181.1_30887.t1 | 2 | 2 | LIM | 63 | 120 | 1.1e-32 | 111.8 | 1.7e-20 | 5.1e-17 | 61.6 |
| pfu_aug1.0_5181.1_30887.t1 | 1 | 1 | Homeobox | 260 | 316 | 8.8e-20 | 70.0 | 6.0e-23 | 1.8e-19 | 69.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5181.1_30887.t1 | gi|345132131|gb|AEN75258.1| | Lim1 [Neanthes arenaceodentata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5181.1_30887.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5181.1_30887.t1 atggtgcaatgcgccgggtgcgacagacccattttggaccgatttttgttgaacgttttagatcgtgcttggcacacgaa atgtgtgcaatgttctgactgtaaaatgatccttacggacaagtgtttttctagggaaggaaaacttttttgccgaaatg actttttccggcgtttcggaacaaagtgcgccggttgttcgcagggaatttccccaaacgacctagtacggagagctaaa aataaagtttttcatcttaagtgttttacatgcataatatgtagaaaacagttgtccacgggagaggaactctacatcat ggacgaaaaccgattcatatgtaaagaagactatattagcagcaaattacaaggatcgtcggatttagatgaagatgaca tggatctggataacggattagagaaccagacatctttatcggataaagactttagtttagacgatgataattgtgcggac atcgatagcaaggagaacattctgaccagtattccaaacaacataaataacaacaacaacagcacaaatatgaataaaaa taactctatgaattccctgccacccagccccgacccaattaaggacgagacggcgctgttaaaaatttcctctgactcga accatagtagtcaaagttgtgatacgaacggtaattctattccgccaaatgccaatgtgaccacccctgatggcgacaga tcgggggaggaaattatagagggcggaggagggggctccggggctggggccaaaagaaggggaccaagaacgactataaa agcaaaacaattagaaactttaaaagcggcgtttgctgccaccccgaaacctacacgtcatatacgggaacagctggcac aagaaaccgggctcaacatgcgggttattcaggtttggtttcaaaatcgccgatcgaaagaaaggcgaatgaagcagctt agcgcactcggtgcaagaagacacttcttccgtaacccacggcgcatgcgcgccctccgggcagggatgtcgcccagcga actcgacgatagcgatatgatgggaggtccgggattcgggtatttttcagatcagatgcccggaagactaagcatcaaca accgtcgctttagccgtacagaaaaggtcaaaactggtggacttatcaaaatcggtggctcatcacaattgatggacata tcaaaactggtggacgtatcaaaacttttggatgtatcagaactggtgaacgtatcaaaactggtggatgtatcaaaact ggtggacgtatccaaactggtggacgtatcaaaacttttggacgtatcaaaactggtggacgtatcaaaattggtggacg tatcaaaactggtggacgtatcacaactggtggacatatcaaaactggtggacgtatcaaaattggtggacgtatcaaga ctggtggatgtatcaaaactggtggacgtatcaaaattggtggatatgtcaaaagtggcggacgtatcaaaactggtgga cgtatcaaaacttttggacgtatcaaaactggtggacatatcaaaactggtggacgtatcaaaacttttggatgtatcaa aactggtgaacgtatcaagactggtggatgtatcaaaactggtggacgtatcaaaactggtggacgtattaaaattgatg gacgtatcaaaagtttcggacgtatcaaaacttttggacgtatcaaaactggtggacatatga |
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Protein
| Protein ID | pfu_aug1.0_5181.1_30887.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5181.1_30887.t1 MVQCAGCDRPILDRFLLNVLDRAWHTKCVQCSDCKMILTDKCFSREGKLFCRNDFFRRFGTKCAGCSQGISPNDLVRRAK NKVFHLKCFTCIICRKQLSTGEELYIMDENRFICKEDYISSKLQGSSDLDEDDMDLDNGLENQTSLSDKDFSLDDDNCAD IDSKENILTSIPNNINNNNNSTNMNKNNSMNSLPPSPDPIKDETALLKISSDSNHSSQSCDTNGNSIPPNANVTTPDGDR SGEEIIEGGGGGSGAGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQL SALGARRHFFRNPRRMRALRAGMSPSELDDSDMMGGPGFGYFSDQMPGRLSINNRRFSRTEKVKTGGLIKIGGSSQLMDI SKLVDVSKLLDVSELVNVSKLVDVSKLVDVSKLVDVSKLLDVSKLVDVSKLVDVSKLVDVSQLVDISKLVDVSKLVDVSR LVDVSKLVDVSKLVDMSKVADVSKLVDVSKLLDVSKLVDISKLVDVSKLLDVSKLVNVSRLVDVSKLVDVSKLVDVLKLM DVSKVSDVSKLLDVSKLVDI |
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