Gene
| Gene Model ID | pfu_aug1.0_52017.1_63412 |
|---|---|
| Locus | scaffold52017.1 : 1 ... 4075 : - |
| To GenomeBrowser | scaffold52017.1:1..4075 |
| Genes list of scaffold | scaffold52017.1 |
| Synonym | NA |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Tbx1/10 |
| Description | High Blast hits to various organisms Tbx1 and Tbx10.NJ tree shows an affinity to HsTbx1 and HsTbx10. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_52017.1_63412.t1 | 2 | 1 | T-box | 1 | 91 | 6.99949e-42 | 142.9 | 2.5e-40 | 3.7e-36 | 124.3 |
| pfu_aug1.0_52017.1_63412.t1 | 2 | 2 | T-box | 88 | 107 | 6.99949e-42 | 142.9 | 4.3e-09 | 6.4e-05 | 22.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_52017.1_63412.t1 | gi|194218551|ref|XP_001917000.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_52017.1_63412.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_52017.1_63412.t1 atgtttcccacatttcaagtgcgcctgtacggactggatccaatggcggattacatggttatgatggacttcgtgccgtg tgacgacaagcgatatagatattccttccatagctctagctgggtggtggccgggaaggcggatccacacatgcctgggc ggatccatgtccaccccgactctcccgccaagggatcacaatggatgaagcaggtggtgtcctttgacaaactcaaactg accaataatttgatggatgacaacggccatataacacaacttaaaatagccagtaatccatttgctaaaggtttcagaga tgtggatccaaacgaatggtaa |
|
Protein
| Protein ID | pfu_aug1.0_52017.1_63412.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_52017.1_63412.t1 MFPTFQVRLYGLDPMADYMVMMDFVPCDDKRYRYSFHSSSWVVAGKADPHMPGRIHVHPDSPAKGSQWMKQVVSFDKLKL TNNLMDDNGHITQLKIASNPFAKGFRDVDPNEW |
|