Gene
| Gene Model ID | pfu_aug1.0_5215.1_45145 |
|---|---|
| Locus | scaffold5215.1 : 112325 ... 121565 : - |
| To GenomeBrowser | scaffold5215.1:112325..121565 |
| Genes list of scaffold | scaffold5215.1 |
| Synonym | pfu_aug2.0_38.1_26717 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5215.1_45145.t1 | 1 | 1 | IBR | 21 | 68 | 2.1e-08 | 33.9 | 5.6e-12 | 2.1e-08 | 33.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5215.1_45145.t1 | gi|291233619|ref|XP_002736743.1| | PREDICTED: E3 ubiquitin-protein ligase arih1-like isoform X1 [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| maleGonad | 3 |
Transcript
| Transcript ID | pfu_aug1.0_5215.1_45145.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5215.1_45145.t1 atgtatatttcagataccctctacagtcacaagaatcttgttgaatcatttcaaatgggacaaggaaaaacttatggaaa ggaatgtccaaaatgtcatgttaccattgagaaagatggagggtgtaatcacatggtgtgtaaaaaccagaactgtaaag ctgatttttgttgggtgtgtctaggcccctgggagcctcatggatcttcatggtataactgtaatagatatgatgaagat gaagcaaagaaggcaagagatgcccaagagcattctaggtcagctctacagagataccttttctactgcaacagatacat gaatcacatgcagagtctcaagtttgaaaacaaagtatacctcttcttgtatatcttattgattttgttgtga |
|
Protein
| Protein ID | pfu_aug1.0_5215.1_45145.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5215.1_45145.t1 MYISDTLYSHKNLVESFQMGQGKTYGKECPKCHVTIEKDGGCNHMVCKNQNCKADFCWVCLGPWEPHGSSWYNCNRYDED EAKKARDAQEHSRSALQRYLFYCNRYMNHMQSLKFENKVYLFLYILLILL |
|