Gene
| Gene Model ID | pfu_aug1.0_522.1_22207 |
|---|---|
| Locus | scaffold522.1 : 66826 ... 71538 : + |
| To GenomeBrowser | scaffold522.1:66826..71538 |
| Genes list of scaffold | scaffold522.1 |
| Synonym | pfu_aug2.0_1710.1_01795 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-MIST |
| Description | Best hit to NP_803238 class A basic helix-loop-helix protein 15 [Homo sapiens] with 5e-29 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_522.1_22207.t1 | 1 | 1 | HLH | 94 | 145 | 4.9e-17 | 61.3 | 6.5e-21 | 9.7e-17 | 60.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_522.1_22207.t1 | gi|328777481|ref|XP_003249350.1| | PREDICTED: class A basic helix-loop-helix protein 15-like isoform X1 [Apis mellifera] | 6.0e-35 |
Transcript
| Transcript ID | pfu_aug1.0_522.1_22207.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_522.1_22207.t1 atgcgatctacaaaagctgaagccatgacgtcagcttttgattttgaaatgtccgaagacggaacagagcaaaccgacag cacaagtttctgggacattccgggcctgcgcgccactgactatcaaattagaaaaagagcaaaacgtgacggaccggcat cgccatcggattccgggacaggatctacaactgatgattctagcgaacggaagattacaagaagtcctaaaaagtcttcc aaacgtaggaaaggtgttagtgctcgagaaagaaatatacgcagattagaaagtaatgaaagagagaggcagcgaatgca ttcattaaacgatgcttttcaagatcttcgagaagtgattccgcacgtcaaactggacagaaaactttccaaaatagaga cactcactttggctaaaaattacattaaagccctgacaaacgtaatatgcgatatgcgcggagaggatgcgccgtatgag tttgacaacaatgcaaaaatggataataaatctgaggatgatgacgtcatcaacagcaatgacactgaggataccgttga cgcattggacatcgaaacgacatcagaattgcatggtcaaggaactgttacattttcataa |
|
Protein
| Protein ID | pfu_aug1.0_522.1_22207.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_522.1_22207.t1 MRSTKAEAMTSAFDFEMSEDGTEQTDSTSFWDIPGLRATDYQIRKRAKRDGPASPSDSGTGSTTDDSSERKITRSPKKSS KRRKGVSARERNIRRLESNERERQRMHSLNDAFQDLREVIPHVKLDRKLSKIETLTLAKNYIKALTNVICDMRGEDAPYE FDNNAKMDNKSEDDDVINSNDTEDTVDALDIETTSELHGQGTVTFS |
|