Gene
| Gene Model ID | pfu_aug1.0_5263.1_52506 |
|---|---|
| Locus | scaffold5263.1 : 8776 ... 16490 : + |
| To GenomeBrowser | scaffold5263.1:8776..16490 |
| Genes list of scaffold | scaffold5263.1 |
| Synonym | pfu_aug2.0_3083.1_12374 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5263.1_52506.t1 | 1 | 1 | RRM_1 | 9 | 70 | 1.6e-16 | 59.6 | 8.5e-20 | 2.1e-16 | 59.2 |
| pfu_aug1.0_5263.1_52506.t1 | 1 | 1 | RRM_6 | 9 | 70 | 5.9e-11 | 42.1 | 3.2e-14 | 7.9e-11 | 41.7 |
| pfu_aug1.0_5263.1_52506.t1 | 1 | 1 | RRM_5 | 26 | 75 | 1.3e-09 | 37.7 | 8.3e-13 | 2.0e-09 | 37.1 |
| pfu_aug1.0_5263.1_52506.t1 | 1 | 1 | zf-CCHC | 90 | 106 | 1.6e-07 | 30.9 | 1.3e-10 | 3.2e-07 | 29.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5263.1_52506.t1 | gi|291231291|ref|XP_002735598.1| | PREDICTED: RNA-binding protein lark-like isoform X1 [Saccoglossus kowalevskii] | 2.0e-34 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 2 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_5263.1_52506.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5263.1_52506.t1 atgcctccatcagtttctaccaaactctatgttgggaatcttccagaaacatgccgaaaagtagaactggagaaaatgtt tgcagaatatggcaaagttcttgaatgtgatatagtcagaaattatgcatttgttcattttgacaatccaaatgaagcca agatggcccaagcaaatttagatggagctgagtttgaaggtgttaaattaaaagtagagctctcacacagtaaagttcga cagaagcctggaatgggtgggaaaggagaatgttatcgttgtggtagagagggtcactggtcagcagattgtccaaaagg cccaagcagacctaaaggaagaccagacccttacatgagagatccctacccccctccaagggacccctacccagatcctt actacagagaccgatatccccctccccctccacatgacagatataggccatatcctgacccgtatgagagacgaccgctc cctcccccacgagatccatactacagggagagagtagatccatacgccagaccacccccagagtactacggtaggaggtc acctcctccaatatcaaggtatgtctgtgcttttatgccatattcatgtatgtacagtttttaa |
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Protein
| Protein ID | pfu_aug1.0_5263.1_52506.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5263.1_52506.t1 MPPSVSTKLYVGNLPETCRKVELEKMFAEYGKVLECDIVRNYAFVHFDNPNEAKMAQANLDGAEFEGVKLKVELSHSKVR QKPGMGGKGECYRCGREGHWSADCPKGPSRPKGRPDPYMRDPYPPPRDPYPDPYYRDRYPPPPPHDRYRPYPDPYERRPL PPPRDPYYRERVDPYARPPPEYYGRRSPPPISRYVCAFMPYSCMYSF |
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