Gene
| Gene Model ID | pfu_aug1.0_5263.1_52507 |
|---|---|
| Locus | scaffold5263.1 : 16591 ... 25127 : - |
| To GenomeBrowser | scaffold5263.1:16591..25127 |
| Genes list of scaffold | scaffold5263.1 |
| Synonym | pfu_aug2.0_3083.1_12375 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5263.1_52507.t1 | 1 | 1 | Ribosomal_S10 | 26 | 127 | 1.1e-17 | 63.6 | 9.7e-22 | 1.4e-17 | 63.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5263.1_52507.t1 | gi|261289223|ref|XP_002603054.1| | hypothetical protein BRAFLDRAFT_198892 [Branchiostoma floridae] | 9.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5263.1_52507.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5263.1_52507.t1 tgctgccatgagaagcaaagagtactccacaaatgcaagttccacagaagaagaagaagatgacctctatcgcctgatct ccttggagatgaaaggtcacgacaaggcggtgttagatagttatacaaattttattgtaacagctgctgatgagctatcc ttaaaatgtagagtcttggataaaacggagacaccaaaggtacattatgacagacagactttacttaaatctgttcatgt aaacaaaacggctatggcgcaatatgaagtacggacccactatagtattatacattttaaacatttgactggaactactg tcagtattgttttggaatacctagaaaggaacctaccagagggagtggcagtcaaagtctcaaagcaccgactagagaga gtgcctgatcaccttgtaccaccaaaggaggctgtggaaacgtag |
|
Protein
| Protein ID | pfu_aug1.0_5263.1_52507.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5263.1_52507.t1 AAMRSKEYSTNASSTEEEEDDLYRLISLEMKGHDKAVLDSYTNFIVTAADELSLKCRVLDKTETPKVHYDRQTLLKSVHV NKTAMAQYEVRTHYSIIHFKHLTGTTVSIVLEYLERNLPEGVAVKVSKHRLERVPDHLVPPKEAVET |
|