Gene
| Gene Model ID | pfu_aug1.0_5286.1_16623 |
|---|---|
| Locus | scaffold5286.1 : 1 ... 23932 : - |
| To GenomeBrowser | scaffold5286.1:1..23932 |
| Genes list of scaffold | scaffold5286.1 |
| Synonym | pfu_aug2.0_787.1_24410 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5286.1_16623.t1 | 3 | 1 | Vps8 | 112 | 295 | 0.0 | 215.5 | 0.0 | 0.0 | 205.0 |
| pfu_aug1.0_5286.1_16623.t1 | 3 | 1 | Clathrin | 161 | 217 | 6.5e-15 | 54.9 | 0.00033 | 0.49 | 10.0 |
| pfu_aug1.0_5286.1_16623.t1 | 3 | 2 | Clathrin | 375 | 456 | 6.5e-15 | 54.9 | 1.3e-05 | 0.019 | 14.5 |
| pfu_aug1.0_5286.1_16623.t1 | 3 | 2 | Vps8 | 426 | 455 | 0.0 | 215.5 | 0.47 | 700.0 | -0.7 |
| pfu_aug1.0_5286.1_16623.t1 | 3 | 3 | Clathrin | 492 | 606 | 6.5e-15 | 54.9 | 9.1e-11 | 1.4e-07 | 31.2 |
| pfu_aug1.0_5286.1_16623.t1 | 3 | 3 | Vps8 | 516 | 619 | 0.0 | 215.5 | 3.6e-05 | 0.053 | 12.7 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5286.1_16623.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5286.1_16623.t1 agaattgaggttttggtgaggcaggagaagtatcatgatgctttagctctgtcgttgtcgttttatgagaatcgtgccaa aggtattgttggacttactggatcgtctcgacagaaacgggagctggtagctgacttgatgttagaccttctatttgatt atgtggatctgtccatgaccaagctgtgtccagaaaaaggtaaaatggaggagttagaggagtattatcagggtattgta ccagtctgtgtggattactgcctacacttagatagaacggatatactgtttggcagaatctatgagagattcggagagga tgtgattgccaaggggacgtttctggagtgtttagagccgtacattatgagcgacaaacttacgtcaattccaccgttag tgatgaaggattttgttacgcattacgaaaatcgttgtatgctggagagtgtagaagcctgtatagttcacctggacgtc acatcactagatattcatcaggttgtaagtttgtgttggggacatggattatatgatgctataatctatgtgtataacaa aggcatgcaggactacactactccgctagaagaactgctgggaacccttcaggctgccatagaaacgggtaaacaactga cggacagccaaatcaagctgggaaacaaacttcttgtctatatcagttgttgtttggcgggccgagcttatcctctcgga gacattcctgaagaatctgtagagatggtcaaaaacagtgtgtttgattgcgtaacgtcacttcatcgcaggcatagatc agctgaggagcaagcttatccatacctgaggacgttattgcagtttgacactcgggaattcctcaatgtgttggctttgg ctttcgaagaagaagagtttaacacagatgaagggaggaagaaaagacagagagttgttgacatcctgttacaggtcatg gtggagagtgtgggatttactccaacacaggttggagttttgttcactttcctggctcggcagatggctcgccatgagaa cactatactggtgaacagagttctgtttgagcaggtactggagtttctcgccaacccagatgacgagtcaaggcatgagg agagacagcaggccttactggagttattacacgctggaggtctgcagcaaatagatgaggaaaaattactgtcgctggca gagaatgctaaattttaccgtgtctgtgagattttgtacgagaaaagacgtcagtttgacaaaattctgtcatgttacct cagggactatgccagaaagtaccatgcattcagctatattggtagtatactgaacagcgagttattctcagacattgaga aggccaggcttaaagaggaagcgcttgatcatttacaggaccttgtatctatagattgtaagcaggcagcccagatggtg atttctagcttcagttctaacctcagtgatatcgtacaccaactacagggcaatcagcaagtcctatttgagttcctaca aggtgttatgtcttataaagattcaatggggagtgccattcaccaagagaaacagatcaatgtcgagcctcgtattgtgg agctatttatagaactgatggcgcaattcaaacctgccgaagtgcataattttatcaaaatgaatgagggatatagaata gaacaaacccttgagatctgtaggaaatacaaattagatgatgccactgcgtttttattggagaaggctggtgacgtaca aggagcattctccataatgcttgagattttacagcagaaaatgagacagctaacagaagctttactcaaagaacaatctg actcagagtataagatgctgttttttgaggtggacaccaaagttcttgtggtgattcaactttgtcagaggaactctgga aaaatggacgaaaaaggcagagagacactgatggtgacatgtaaaaacctactgaaccacgatatacatcaacatctacg tagcctgacatgtgctgctgccaagggctatatacccaagggagagaactgtaatctctgtaataaacagtttgtcagtc agatggattcagacacagtcgttgttttcagatgtggccatagttatcacataggttgtttacgatcggtgggttccgtt cacgtgatcgacaaggaggaacattgggcatgttacttgtgcagtcatagtaaacgtaatcagatccagagttctcgatt tcatcgaagtctgtctaatcccaaacaagtggcacaaaaaaccttggcagagaaaagtaaagggctatcattggatgccc agcacacacaggctgtagactatgtcaggaaattccttaaaactccctctcggtggaagtatacttag |
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Protein
| Protein ID | pfu_aug1.0_5286.1_16623.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5286.1_16623.t1 RIEVLVRQEKYHDALALSLSFYENRAKGIVGLTGSSRQKRELVADLMLDLLFDYVDLSMTKLCPEKGKMEELEEYYQGIV PVCVDYCLHLDRTDILFGRIYERFGEDVIAKGTFLECLEPYIMSDKLTSIPPLVMKDFVTHYENRCMLESVEACIVHLDV TSLDIHQVVSLCWGHGLYDAIIYVYNKGMQDYTTPLEELLGTLQAAIETGKQLTDSQIKLGNKLLVYISCCLAGRAYPLG DIPEESVEMVKNSVFDCVTSLHRRHRSAEEQAYPYLRTLLQFDTREFLNVLALAFEEEEFNTDEGRKKRQRVVDILLQVM VESVGFTPTQVGVLFTFLARQMARHENTILVNRVLFEQVLEFLANPDDESRHEERQQALLELLHAGGLQQIDEEKLLSLA ENAKFYRVCEILYEKRRQFDKILSCYLRDYARKYHAFSYIGSILNSELFSDIEKARLKEEALDHLQDLVSIDCKQAAQMV ISSFSSNLSDIVHQLQGNQQVLFEFLQGVMSYKDSMGSAIHQEKQINVEPRIVELFIELMAQFKPAEVHNFIKMNEGYRI EQTLEICRKYKLDDATAFLLEKAGDVQGAFSIMLEILQQKMRQLTEALLKEQSDSEYKMLFFEVDTKVLVVIQLCQRNSG KMDEKGRETLMVTCKNLLNHDIHQHLRSLTCAAAKGYIPKGENCNLCNKQFVSQMDSDTVVVFRCGHSYHIGCLRSVGSV HVIDKEEHWACYLCSHSKRNQIQSSRFHRSLSNPKQVAQKTLAEKSKGLSLDAQHTQAVDYVRKFLKTPSRWKYT |
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