Gene
| Gene Model ID | pfu_aug1.0_53025.1_56148 |
|---|---|
| Locus | scaffold53025.1 : 46 ... 3929 : + |
| To GenomeBrowser | scaffold53025.1:46..3929 |
| Genes list of scaffold | scaffold53025.1 |
| Synonym | pfu_aug2.0_110.1_00263 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin like |
| Description | Blast best hit to NCBI XP_003228902.1 (Anolis carolinensis) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_53025.1_56148.t1 | 2 | 1 | EF-hand_4 | 19 | 88 | 4.9e-06 | 26.2 | 6.2e-05 | 0.051 | 13.3 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 1 | EF-hand_1 | 27 | 55 | 2.5e-33 | 110.8 | 1.3e-12 | 1.1e-09 | 36.9 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 1 | EF-hand_8 | 27 | 54 | 5.3e-25 | 86.7 | 3.6e-05 | 0.03 | 13.9 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 1 | EF-hand_6 | 27 | 56 | 8.6e-24 | 81.2 | 3.0e-12 | 2.5e-09 | 36.2 |
| pfu_aug1.0_53025.1_56148.t1 | 2 | 1 | EF-hand_7 | 29 | 88 | 8.8e-30 | 102.6 | 7.6e-17 | 6.3e-14 | 51.8 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 1 | EF-hand_5 | 29 | 52 | 7.6e-23 | 78.7 | 2.9e-10 | 2.4e-07 | 29.7 |
| pfu_aug1.0_53025.1_56148.t1 | 2 | 1 | SPARC_Ca_bdg | 30 | 85 | 4.8e-06 | 26.5 | 2.2e-05 | 0.018 | 15.0 |
| pfu_aug1.0_53025.1_56148.t1 | 2 | 1 | EF-hand_9 | 31 | 89 | 7.8e-08 | 32.1 | 1.0e-08 | 8.4e-06 | 25.6 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 2 | EF-hand_8 | 40 | 90 | 5.3e-25 | 86.7 | 9.6e-14 | 7.9e-11 | 41.4 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 2 | EF-hand_1 | 63 | 89 | 2.5e-33 | 110.8 | 3.4e-10 | 2.8e-07 | 29.3 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 2 | EF-hand_5 | 64 | 87 | 7.6e-23 | 78.7 | 3.7e-05 | 0.03 | 13.6 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 2 | EF-hand_6 | 69 | 89 | 8.6e-24 | 81.2 | 9.4e-05 | 0.077 | 12.9 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 3 | EF-hand_8 | 98 | 126 | 5.3e-25 | 86.7 | 7.4e-08 | 6.1e-05 | 22.5 |
| pfu_aug1.0_53025.1_56148.t1 | 2 | 2 | SPARC_Ca_bdg | 98 | 154 | 4.8e-06 | 26.5 | 0.00099 | 0.81 | 9.7 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 3 | EF-hand_1 | 100 | 127 | 2.5e-33 | 110.8 | 3.2e-11 | 2.6e-08 | 32.5 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 3 | EF-hand_6 | 100 | 127 | 8.6e-24 | 81.2 | 5.4e-11 | 4.4e-08 | 32.3 |
| pfu_aug1.0_53025.1_56148.t1 | 2 | 2 | EF-hand_7 | 101 | 155 | 8.8e-30 | 102.6 | 1.4e-16 | 1.1e-13 | 51.0 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 3 | EF-hand_5 | 101 | 125 | 7.6e-23 | 78.7 | 3.3e-09 | 2.7e-06 | 26.4 |
| pfu_aug1.0_53025.1_56148.t1 | 2 | 2 | EF-hand_4 | 104 | 155 | 4.9e-06 | 26.2 | 0.0002 | 0.17 | 11.6 |
| pfu_aug1.0_53025.1_56148.t1 | 2 | 2 | EF-hand_9 | 105 | 153 | 7.8e-08 | 32.1 | 0.053 | 44.0 | 4.0 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 4 | EF-hand_8 | 115 | 155 | 5.3e-25 | 86.7 | 1.9e-11 | 1.5e-08 | 34.0 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 4 | EF-hand_1 | 136 | 155 | 2.5e-33 | 110.8 | 4.1e-07 | 0.00034 | 19.6 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 4 | EF-hand_5 | 137 | 154 | 7.6e-23 | 78.7 | 7.9e-05 | 0.065 | 12.6 |
| pfu_aug1.0_53025.1_56148.t1 | 4 | 4 | EF-hand_6 | 141 | 154 | 8.6e-24 | 81.2 | 0.25 | 200.0 | 2.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_53025.1_56148.t1 | gi|327288375|ref|XP_003228902.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_53025.1_56148.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_53025.1_56148.t1 atgttttgtatttatctatatcaaaatacattttcccttttactacaggccggtcagctcacagatgaacagattaaaga atttaaggaggcattcaacttgtttgacaagaatggcgacggtacaataacaaccaaggaactcggtactttaatgaagt cactaggtcaaaatccaaccgaagctgaacttgtggatatgatcaaagaagtagacgttgatggaaatggaacggtcgaa tttcccgaatttattaacatgatgacgggaagaagaagagacactgacctcgaagatgaaattagagaggccttcaaagc gttcgatagagacggaagtaatttgataagtaaagatgaattacgtcaagtgatgacaaaaatcggaaataatatcacga atagggaattagaagatatgatacgagaggcggacattgacggtgacggaaatattaattacgaaggtaaactatattaa |
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Protein
| Protein ID | pfu_aug1.0_53025.1_56148.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_53025.1_56148.t1 MFCIYLYQNTFSLLLQAGQLTDEQIKEFKEAFNLFDKNGDGTITTKELGTLMKSLGQNPTEAELVDMIKEVDVDGNGTVE FPEFINMMTGRRRDTDLEDEIREAFKAFDRDGSNLISKDELRQVMTKIGNNITNRELEDMIREADIDGDGNINYEGKLY |
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