Gene
Gene Model ID | pfu_aug1.0_5322.1_16629 |
---|---|
Locus | scaffold5322.1 : 10736 ... 19635 : - |
To GenomeBrowser | scaffold5322.1:10736..19635 |
Genes list of scaffold | scaffold5322.1 |
Synonym | pfu_aug2.0_1713.1_11826 |
Manual annotation
Study field | other developmental genes |
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Gene name | Patched |
Description | NCBI Blastp hit to gb|EFX90375.1| putative hedgehog receptor patched [Daphnia pulex]. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5322.1_16629.t1 | 2 | 1 | Patched | 3 | 34 | 1.1e-20 | 73.2 | 4.5e-08 | 0.00017 | 19.7 |
pfu_aug1.0_5322.1_16629.t1 | 2 | 2 | Patched | 201 | 361 | 1.1e-20 | 73.2 | 3.8e-18 | 1.4e-14 | 53.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_5322.1_16629.t1 | gi|321479419|gb|EFX90375.1| | putative hedgehog receptor patched [Daphnia pulex] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_5322.1_16629.t1 |
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Definition | - |
>pfu_aug1.0_5322.1_16629.t1 atgaattcgaaaaagaggatcgttccattcctagctcttggtcttggggtagatgacatgtttctcattgctcacacata ctcggaaaatgcaatgaacaagcatattcccctagcggtgagtgtattgaagaatatacctgatttattacatcttctag atccacaagatatagttattgccatttggtactgcttttatacgtgttttccaggctttgtttatactgatctacaaaaa gcttatgacacagagattttagacggcagaatttcaaaagaccgttggaatggcaatgcatcagacaatggtatactggc cttcaaactgctggctcaaaccggcgatgttgacaatccagttgacataacaaggattccatcgtccaaacttatagact ctgagggaataatatcaccagatggtttctataactatctcactgcatgggtgtccaatgacgcattggcgtacgcgtct tctcaagcggacttccatccccgccctagtacgtggtatcatgacccacaggacttcgactataaagtcccaaaagctca gcccttagtgtatacacagttgcctttctacctaactgatcagtcaaacacagagatcatcatcaatacaatcaaggcca tcagagatatttgtgatgactttgcagacaaaggtctgcccaactaccctagtggggagccttttacttactgggaacag tacatacatctcaggttctatctagccatggccattctgtgtgtcctaatggtgacgtttgtggtactgaccattgtcct aatgaatccatggctggccagtatcattgtggtgtttctcacgatgatggtggtggagttgtttggtatcatgggcctag gggacatcaaactgagtgcagttcccgccgtcattcttatcgtcagcgtaggaatcggggtggaattcaccgtccatgta tctgtggcttttctcacagccatcggctcaaggaacaagagaacgacggtatctatccaacacacctttgctccagtgat tcacggagccatctccacccttttgggaatcgtcatgttggtcggtgcagaattcgaattcattgtaaaatctcgagtaa atcgcttatctgattgcgccaagacaaaacatgccaatgaatatgtcaagtttcgattccgatgccccataagtggtttt gtttcttttcatgcaatgtcagatcatttcaatcaccccattgtgaacctctctatatcgtataatacagtggaagcatt taccttacatagcaataaaacgcagcgaggacccaatgtaaaggagtgtggaccacccaactag |
Protein
Protein ID | pfu_aug1.0_5322.1_16629.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5322.1_16629.t1 MNSKKRIVPFLALGLGVDDMFLIAHTYSENAMNKHIPLAVSVLKNIPDLLHLLDPQDIVIAIWYCFYTCFPGFVYTDLQK AYDTEILDGRISKDRWNGNASDNGILAFKLLAQTGDVDNPVDITRIPSSKLIDSEGIISPDGFYNYLTAWVSNDALAYAS SQADFHPRPSTWYHDPQDFDYKVPKAQPLVYTQLPFYLTDQSNTEIIINTIKAIRDICDDFADKGLPNYPSGEPFTYWEQ YIHLRFYLAMAILCVLMVTFVVLTIVLMNPWLASIIVVFLTMMVVELFGIMGLGDIKLSAVPAVILIVSVGIGVEFTVHV SVAFLTAIGSRNKRTTVSIQHTFAPVIHGAISTLLGIVMLVGAEFEFIVKSRVNRLSDCAKTKHANEYVKFRFRCPISGF VSFHAMSDHFNHPIVNLSISYNTVEAFTLHSNKTQRGPNVKECGPPN |