Gene
| Gene Model ID | pfu_aug1.0_5322.1_16629 |
|---|---|
| Locus | scaffold5322.1 : 10736 ... 19635 : - |
| To GenomeBrowser | scaffold5322.1:10736..19635 |
| Genes list of scaffold | scaffold5322.1 |
| Synonym | pfu_aug2.0_1713.1_11826 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Patched |
| Description | NCBI Blastp hit to gb|EFX90375.1| putative hedgehog receptor patched [Daphnia pulex]. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5322.1_16629.t1 | 2 | 1 | Patched | 3 | 34 | 1.1e-20 | 73.2 | 4.5e-08 | 0.00017 | 19.7 |
| pfu_aug1.0_5322.1_16629.t1 | 2 | 2 | Patched | 201 | 361 | 1.1e-20 | 73.2 | 3.8e-18 | 1.4e-14 | 53.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5322.1_16629.t1 | gi|321479419|gb|EFX90375.1| | putative hedgehog receptor patched [Daphnia pulex] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_5322.1_16629.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5322.1_16629.t1 atgaattcgaaaaagaggatcgttccattcctagctcttggtcttggggtagatgacatgtttctcattgctcacacata ctcggaaaatgcaatgaacaagcatattcccctagcggtgagtgtattgaagaatatacctgatttattacatcttctag atccacaagatatagttattgccatttggtactgcttttatacgtgttttccaggctttgtttatactgatctacaaaaa gcttatgacacagagattttagacggcagaatttcaaaagaccgttggaatggcaatgcatcagacaatggtatactggc cttcaaactgctggctcaaaccggcgatgttgacaatccagttgacataacaaggattccatcgtccaaacttatagact ctgagggaataatatcaccagatggtttctataactatctcactgcatgggtgtccaatgacgcattggcgtacgcgtct tctcaagcggacttccatccccgccctagtacgtggtatcatgacccacaggacttcgactataaagtcccaaaagctca gcccttagtgtatacacagttgcctttctacctaactgatcagtcaaacacagagatcatcatcaatacaatcaaggcca tcagagatatttgtgatgactttgcagacaaaggtctgcccaactaccctagtggggagccttttacttactgggaacag tacatacatctcaggttctatctagccatggccattctgtgtgtcctaatggtgacgtttgtggtactgaccattgtcct aatgaatccatggctggccagtatcattgtggtgtttctcacgatgatggtggtggagttgtttggtatcatgggcctag gggacatcaaactgagtgcagttcccgccgtcattcttatcgtcagcgtaggaatcggggtggaattcaccgtccatgta tctgtggcttttctcacagccatcggctcaaggaacaagagaacgacggtatctatccaacacacctttgctccagtgat tcacggagccatctccacccttttgggaatcgtcatgttggtcggtgcagaattcgaattcattgtaaaatctcgagtaa atcgcttatctgattgcgccaagacaaaacatgccaatgaatatgtcaagtttcgattccgatgccccataagtggtttt gtttcttttcatgcaatgtcagatcatttcaatcaccccattgtgaacctctctatatcgtataatacagtggaagcatt taccttacatagcaataaaacgcagcgaggacccaatgtaaaggagtgtggaccacccaactag |
|
Protein
| Protein ID | pfu_aug1.0_5322.1_16629.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5322.1_16629.t1 MNSKKRIVPFLALGLGVDDMFLIAHTYSENAMNKHIPLAVSVLKNIPDLLHLLDPQDIVIAIWYCFYTCFPGFVYTDLQK AYDTEILDGRISKDRWNGNASDNGILAFKLLAQTGDVDNPVDITRIPSSKLIDSEGIISPDGFYNYLTAWVSNDALAYAS SQADFHPRPSTWYHDPQDFDYKVPKAQPLVYTQLPFYLTDQSNTEIIINTIKAIRDICDDFADKGLPNYPSGEPFTYWEQ YIHLRFYLAMAILCVLMVTFVVLTIVLMNPWLASIIVVFLTMMVVELFGIMGLGDIKLSAVPAVILIVSVGIGVEFTVHV SVAFLTAIGSRNKRTTVSIQHTFAPVIHGAISTLLGIVMLVGAEFEFIVKSRVNRLSDCAKTKHANEYVKFRFRCPISGF VSFHAMSDHFNHPIVNLSISYNTVEAFTLHSNKTQRGPNVKECGPPN |
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