Gene
| Gene Model ID | pfu_aug1.0_53606.1_48800 |
|---|---|
| Locus | scaffold53606.1 : 1 ... 13796 : + |
| To GenomeBrowser | scaffold53606.1:1..13796 |
| Genes list of scaffold | scaffold53606.1 |
| Synonym | pfu_aug2.0_16.1_20057 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_53606.1_48800.t1 | 1 | 1 | Ligase_CoA | 53 | 101 | 2.2e-07 | 30.6 | 4.0e-11 | 2.9e-07 | 30.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_53606.1_48800.t1 | gi|45361311|ref|NP_989233.1| | succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Xenopus (Silurana) tropicalis] | 2.99878e-43 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_53606.1_48800.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_53606.1_48800.t1 tgttttgcatggactgtaaaatcaacattgatgacaatgcggcatttagacaaaaaggcatatttgaaatgaaagactgg tcacaggaggatcctagagaagaacaggctgctcaagccgaccttaattacattggactggacgggaacattggctgttt agtcaacggtgccggccttgccatggcaacaatggacattatcaagttacatgggggaaatcccgctaacttcctggatg taggaggtagtgctactgtcaaacaagtaacggaagcattcaggcttataacctcagacgaaaat |
|
Protein
| Protein ID | pfu_aug1.0_53606.1_48800.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_53606.1_48800.t1 FCMDCKINIDDNAAFRQKGIFEMKDWSQEDPREEQAAQADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGNPANFLDV GGSATVKQVTEAFRLITSDEN |
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