Gene
| Gene Model ID | pfu_aug1.0_537.1_07550 |
|---|---|
| Locus | scaffold537.1 : 20716 ... 37667 : + |
| To GenomeBrowser | scaffold537.1:20716..37667 |
| Genes list of scaffold | scaffold537.1 |
| Synonym | pfu_aug2.0_223.1_10465 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | adenosine deaminase |
| Description | Best hit to AF403115 (chicken). 739 bits, 0.0 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_537.1_07550.t1 | 2 | 1 | dsrm | 104 | 161 | 1.1e-28 | 99.5 | 4.5e-15 | 1.7e-11 | 44.5 |
| pfu_aug1.0_537.1_07550.t1 | 2 | 2 | dsrm | 245 | 303 | 1.1e-28 | 99.5 | 5.2e-18 | 1.9e-14 | 53.9 |
| pfu_aug1.0_537.1_07550.t1 | 1 | 1 | A_deamin | 377 | 698 | 0.0 | 365.3 | 0.0 | 0.0 | 364.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_537.1_07550.t1 | gi|226374647|gb|ACO52475.1| | RNA transcript variant b adenosine deaminase [Doryteuthis opalescens] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_537.1_07550.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_537.1_07550.t1 atgcctttttacagcacgagtcgaaattttcgttttcagaaacctttcggaaacatcaaacgtcggatcatgtttgataa gaatcgtttcttggctaattatataatgtttaatcagtggatatttactctgtcatttgttcatctgttaccgctgacaa atctgttcgtgctgacattgtttgatgttcagaaatttatctttatcgacggtacaggctctagtcacgacatgctgcgt aagaggaaacaccttggtgatgcacaggttattctgggtaaaaagaaacagaaactacagaatgccgggccaaagaatgc cctgatgcaactcaacgaaatcaaacccggactggaattccagagtggacctgtccatgctccgaccttcattatgtgtg tagaggtcaacggcacaaagttcgaaggtcaagggtcaaccaaaaagatcgctaagctacacgcggcagagaaagccctg aaatcctttgtacagttccccaatgcgtcagaggtccataaggtgatgggtaggaagataacggatgctgattttacgtc agacgatgcggacatggtacacggtagtgacatgctgttcaataactttgagaatgaagtaaaggggcaagagagcatgg atctcagtaatggaaaggattccaatgggtctgtcaacatgccaaacggtaaaaagtctgtcgtaccgtcaaaccccgag ggtaaaaatcctgtgatgattcttaatgaactacgaccagggctgaaataccagtacgtgtcagagcagggagaaagcca cgctaagagttttactatgtcagtaaccgtagacggacaaaagtttgagggaacgggaagaaacaagaaactggcaaaat ccagggcagctcaaatggcacttactaaaatattcaacttggaatttagcttcaaaccaggtacgaagcctgtagaaaag ctatcagggagtagtgtaccacaggagcttgcagatctagtatcaaaactggttcttgataagtttggagagcttaccaa caacttcactagtcctctagccaggagaaaagtcttagctggcatcgtcatgacaacaggacagtcatcagaccatgcgt cagttataagtataacgacaggcactaagtgtataaacggtgaatacatgagtgacgagggattatcagtgaacgattgt cacgccgaagtcatcggcagacgagttctcatgcattacttctacaacgagcttgaaaaacatctatcaagtgatagcag cgttaggtcgtcgtctatatttatagagagaccggagggaggctaccaactcaaagaagatattcactttcacctatata taagcacggccccgtgtggggactcgagaattttctctcctcacgagaacattaaaggtgcggacactcaccccaacagg aaagccaggggtcagctccgtacgaagatagagtcaggagaggggacaataccggtgaagtcagaaggtatacagacgtg ggacggcatcctggagggagggagactactcacgatgtcgtgtagcgataaaatagccaggtggaatgtactaggtgttc aaggttccttacttagccatttcatacagcccatatactatgacagtttaatattaggcagcctgtaccacggagagcac ctgttacgtgccgtttattccagagtgtctaatatcgagggcgtcaaatcaccgtatcgtctaaatcaacctttccttag tggtatcagcaatccagaatcacggcagccggggaaagctccaaatatagccgttaactggtgtatgggagataactcct tcgaagttatcaacacaatgacgggaaagacagaacagggtaattcatcaagactttgtaagcaagcgtttttccgccaa ttttgcaatctttatggcaaactctcttcatgtaccagtcagagcgtgaccgcacaaccgaacctttattccgaggcaaa agtatcagtaatggactatcagttaacgaagaggcagctttacgaagcattccagaaggctggttacggaagatgggtga aaaagccgatagaacaagaccagtttggtctactactgcagtaa |
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Protein
| Protein ID | pfu_aug1.0_537.1_07550.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_537.1_07550.t1 MPFYSTSRNFRFQKPFGNIKRRIMFDKNRFLANYIMFNQWIFTLSFVHLLPLTNLFVLTLFDVQKFIFIDGTGSSHDMLR KRKHLGDAQVILGKKKQKLQNAGPKNALMQLNEIKPGLEFQSGPVHAPTFIMCVEVNGTKFEGQGSTKKIAKLHAAEKAL KSFVQFPNASEVHKVMGRKITDADFTSDDADMVHGSDMLFNNFENEVKGQESMDLSNGKDSNGSVNMPNGKKSVVPSNPE GKNPVMILNELRPGLKYQYVSEQGESHAKSFTMSVTVDGQKFEGTGRNKKLAKSRAAQMALTKIFNLEFSFKPGTKPVEK LSGSSVPQELADLVSKLVLDKFGELTNNFTSPLARRKVLAGIVMTTGQSSDHASVISITTGTKCINGEYMSDEGLSVNDC HAEVIGRRVLMHYFYNELEKHLSSDSSVRSSSIFIERPEGGYQLKEDIHFHLYISTAPCGDSRIFSPHENIKGADTHPNR KARGQLRTKIESGEGTIPVKSEGIQTWDGILEGGRLLTMSCSDKIARWNVLGVQGSLLSHFIQPIYYDSLILGSLYHGEH LLRAVYSRVSNIEGVKSPYRLNQPFLSGISNPESRQPGKAPNIAVNWCMGDNSFEVINTMTGKTEQGNSSRLCKQAFFRQ FCNLYGKLSSCTSQSVTAQPNLYSEAKVSVMDYQLTKRQLYEAFQKAGYGRWVKKPIEQDQFGLLLQ |
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