Gene
| Gene Model ID | pfu_aug1.0_53783.1_56157 |
|---|---|
| Locus | scaffold53783.1 : 63 ... 4091 : + |
| To GenomeBrowser | scaffold53783.1:63..4091 |
| Genes list of scaffold | scaffold53783.1 |
| Synonym | pfu_aug2.0_300.1_00561 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_53783.1_56157.t1 | 2 | 1 | DUF383 | 68 | 90 | 4.3e-24 | 85.1 | 0.5 | 3700.0 | -2.8 |
| pfu_aug1.0_53783.1_56157.t1 | 2 | 2 | DUF383 | 106 | 226 | 4.3e-24 | 85.1 | 9.7e-28 | 7.2e-24 | 84.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_53783.1_56157.t1 | gi|260810382|ref|XP_002599943.1| | hypothetical protein BRAFLDRAFT_278465 [Branchiostoma floridae] | 1.0e-37 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_53783.1_56157.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_53783.1_56157.t1 atgagtgttgaggaccttgacagggaacaactggagaaagaattctatccttttctgaatacctcagcaaagaaggaact gaagaacctggctatagaatatttcctgggaataacgggaacagatcaaggaaaggatttcatcggaaagagcgagcctt ttctgaaaggcatcatttcactgacggaagatacagatgttaaaatcgtgcaggatgcgtataaaacattgataaactta acgacaaaacgtgatatttgtaacaggatacgcagctttgatacttttgatgaattcatcaccaaacaattacacctgat tttggacccaagttttgcaaatgctgatggtgcttctgtgtttgtgtcaaatttgactcgccccgaggaatgtgcagcta aagtagcaggcattgttcaaaggaactcacagactatcggagtcgtcaaaattgtgaacgcattatgtaacttacagtac aatataaaggcaaatctacactaccttgcttcagtactggcaaatttgactcaagttaaatccatcagatctgaagtgct tgcacgggaccagtatgtaatacagaagttacttccctttgtggactatcaagactcgtcaatacgacggcatggggtgg tgtgttgtctgaggaactgctgctttgaacctgctctgcagtaccaagaagtgtcgactgtttataaaggataa |
|
Protein
| Protein ID | pfu_aug1.0_53783.1_56157.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_53783.1_56157.t1 MSVEDLDREQLEKEFYPFLNTSAKKELKNLAIEYFLGITGTDQGKDFIGKSEPFLKGIISLTEDTDVKIVQDAYKTLINL TTKRDICNRIRSFDTFDEFITKQLHLILDPSFANADGASVFVSNLTRPEECAAKVAGIVQRNSQTIGVVKIVNALCNLQY NIKANLHYLASVLANLTQVKSIRSEVLARDQYVIQKLLPFVDYQDSSIRRHGVVCCLRNCCFEPALQYQEVSTVYKG |
|