Gene
| Gene Model ID | pfu_aug1.0_538.1_36570 |
|---|---|
| Locus | scaffold538.1 : 18776 ... 27898 : + |
| To GenomeBrowser | scaffold538.1:18776..27898 |
| Genes list of scaffold | scaffold538.1 |
| Synonym | pfu_aug2.0_33.1_10145 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_538.1_36570.t1 | 1 | 1 | Ribosomal_L7Ae | 21 | 110 | 4.9e-27 | 93.2 | 2.0e-30 | 6.1e-27 | 92.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_538.1_36570.t1 | gi|147906322|ref|NP_001080724.1| | NHP2 non-histone chromosome protein 2-like 1 [Xenopus laevis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_538.1_36570.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_538.1_36570.t1 atggttgatgcggtaaaccccaaagcttatcccctggctacagatcaacttacccaggacattctaaatatagttcagca ggcagccaatcataaacagctgaaaaaaggagccaatgaagctaccaagaccctgaacagaggaataagtgagtttatag tgatggcagctgatgccgagccgttagagattctactccatctacctctactttgtgaagacaagaatgttccatatgtt tttgtcaaaagcaaacaagcacttggtcgtgcatgtggagtatctcgaccagttattgcgtgctctgtgacaatgaacga gggttcccagttaaagccccaaatacagaccatgcagcaaaacattgagaaactcctcatttaa |
|
Protein
| Protein ID | pfu_aug1.0_538.1_36570.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_538.1_36570.t1 MVDAVNPKAYPLATDQLTQDILNIVQQAANHKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYV FVKSKQALGRACGVSRPVIACSVTMNEGSQLKPQIQTMQQNIEKLLI |
|