Gene
| Gene Model ID | pfu_aug1.0_53880.1_34550 |
|---|---|
| Locus | scaffold53880.1 : 1 ... 3924 : + |
| To GenomeBrowser | scaffold53880.1:1..3924 |
| Genes list of scaffold | scaffold53880.1 |
| Synonym | pfu_aug2.0_308.1_27203 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_53880.1_34550.t1 | 2 | 1 | TPR_12 | 22 | 64 | 2.4e-11 | 43.4 | 5.7e-08 | 0.00011 | 22.1 |
| pfu_aug1.0_53880.1_34550.t1 | 2 | 2 | TPR_12 | 70 | 110 | 2.4e-11 | 43.4 | 1.9e-07 | 0.00035 | 20.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_53880.1_34550.t1 | gi|260786336|ref|XP_002588214.1| | hypothetical protein BRAFLDRAFT_68857 [Branchiostoma floridae] | 3.0e-14 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_53880.1_34550.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_53880.1_34550.t1 tatcctttgttaagaatttgccttaatatgtgctacatagaacaatctaagggacggtatgccaaccatgagaaagccat agagatgtttctacaagctcattccatagctggagcaaagtaccgtgaggggcatcctgatttagttgacacggctttag ccttagctcaggcctactccagtaccgggtcagaggacggggaaagtgcagcagagaaatacttaaatgagtgcttggca tcgtgtcagacgttacacggaccacatcatccgaagacattacaggtccaagacgaattggcaagactctacatacgcac agacagaagtcaggtcttgtgcatacaaattttatttaaataa |
|
Protein
| Protein ID | pfu_aug1.0_53880.1_34550.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_53880.1_34550.t1 YPLLRICLNMCYIEQSKGRYANHEKAIEMFLQAHSIAGAKYREGHPDLVDTALALAQAYSSTGSEDGESAAEKYLNECLA SCQTLHGPHHPKTLQVQDELARLYIRTDRSQVLCIQILFK |
|