Gene
| Gene Model ID | pfu_aug1.0_5392.1_45194 |
|---|---|
| Locus | scaffold5392.1 : 14016 ... 19022 : + |
| To GenomeBrowser | scaffold5392.1:14016..19022 |
| Genes list of scaffold | scaffold5392.1 |
| Synonym | pfu_aug2.0_83.1_10240 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-ACSa2 |
| Description | Best hit to NP_004307 achaete-scute homolog 1 [Homo sapiens] with 7e-32 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5392.1_45194.t1 | 1 | 1 | HLH | 85 | 134 | 3.3e-18 | 65.1 | 1.7e-21 | 6.2e-18 | 64.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5392.1_45194.t1 | gi|439530|gb|AAA03722.1| | transcriptional regulator [Gallus gallus] | 6.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5392.1_45194.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5392.1_45194.t1 atgactaccacgttgagcctgctacccctccatgccttagcttcctccaatggtggcaccgtgcagatgacatcagggcc ctacatcctggtacgtgcaaccacagtggcacaggatttacaaaacaaacgcattcttaagaaacaggaaaacgtctcgc caaaggaaccagaggcgctgagatgcaaacggcgaacagattcaacaggtttacacaacatcttaccaagaccgcaacct gcagcagtggcaagaagaaacgagcgggaaaggaatcgagtgaaaatggtgaatctgggttttgaaacactaagagaaca tgttccaagtggaaagaagaataagaaaatgagtaaagttgacactttgagagcagcagtggattacattaaacaattac aagacattttaagaaatgaatcagagaatatggacatcacaagtccggtgtcttcggaatcgggtttctccacaattgac tataattcactgtctgatatcagatcttcaacctctacagagcagcactcacccgcaccaagtctgtcatcggacgctct atcagagtctttcagttcagaggaggatgaccttccagacctaggatcatggttctcctga |
|
Protein
| Protein ID | pfu_aug1.0_5392.1_45194.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5392.1_45194.t1 MTTTLSLLPLHALASSNGGTVQMTSGPYILVRATTVAQDLQNKRILKKQENVSPKEPEALRCKRRTDSTGLHNILPRPQP AAVARRNERERNRVKMVNLGFETLREHVPSGKKNKKMSKVDTLRAAVDYIKQLQDILRNESENMDITSPVSSESGFSTID YNSLSDIRSSTSTEQHSPAPSLSSDALSESFSSEEDDLPDLGSWFS |
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