Gene
Gene Model ID | pfu_aug1.0_5392.1_45198 |
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Locus | scaffold5392.1 : 65466 ... 71945 : - |
To GenomeBrowser | scaffold5392.1:65466..71945 |
Genes list of scaffold | scaffold5392.1 |
Synonym | NA |
Manual annotation
Study field | Transcription Factors |
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Gene name | Pfu-ACSa1 |
Description | Best hit to NP_004307 achaete-scute homolog 1 [Homo sapiens] with 2e-32 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5392.1_45198.t1 | 1 | 1 | HLH | 91 | 143 | 9.5e-17 | 60.4 | 1.0e-20 | 1.5e-16 | 59.8 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_5392.1_45198.t1 |
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Definition | - |
>pfu_aug1.0_5392.1_45198.t1 atgggcagcgatcctagacttctggactatggcatgacagacttgtccactatcaacggtcaagctctgtaccacggctt tgtgactgaccgaccgtcttgcatgtattcatcttcgcccgagtcttctcccagcacccctgagaacaaattctacaaga tgcatcaatgcaaagaaaatagagacatgatgtgcaaacgccgactagacttttctggtcagcaaactgactatcttggt ctgcagaaacctccgactgttgcagtagcaaggcgcaacgaaagagagagaaaccgggtaaaactcataaacatgacttt tgcaactttacgcgaacatatcccttctggtgtcaagaaaggcaaaagcaagaaaatgagtaaagtagacacactgaaag ctgcaatagactatattcgttttctccaagagatggtagacgagcacgatgccgtcaatgctgttttggataagaattgc cagcccaaaccagatatccgtgtggttcctgcctcaccctccgtcagttcacccacccctagcatcagttcagatacctc acatgatggtgcggtgctcagcgcagaggaggaagatctgctagacttcaccaactggttctga |
Protein
Protein ID | pfu_aug1.0_5392.1_45198.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5392.1_45198.t1 MGSDPRLLDYGMTDLSTINGQALYHGFVTDRPSCMYSSSPESSPSTPENKFYKMHQCKENRDMMCKRRLDFSGQQTDYLG LQKPPTVAVARRNERERNRVKLINMTFATLREHIPSGVKKGKSKKMSKVDTLKAAIDYIRFLQEMVDEHDAVNAVLDKNC QPKPDIRVVPASPSVSSPTPSISSDTSHDGAVLSAEEEDLLDFTNWF |