Gene
| Gene Model ID | pfu_aug1.0_5392.1_45198 |
|---|---|
| Locus | scaffold5392.1 : 65466 ... 71945 : - |
| To GenomeBrowser | scaffold5392.1:65466..71945 |
| Genes list of scaffold | scaffold5392.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-ACSa1 |
| Description | Best hit to NP_004307 achaete-scute homolog 1 [Homo sapiens] with 2e-32 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5392.1_45198.t1 | 1 | 1 | HLH | 91 | 143 | 9.5e-17 | 60.4 | 1.0e-20 | 1.5e-16 | 59.8 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5392.1_45198.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5392.1_45198.t1 atgggcagcgatcctagacttctggactatggcatgacagacttgtccactatcaacggtcaagctctgtaccacggctt tgtgactgaccgaccgtcttgcatgtattcatcttcgcccgagtcttctcccagcacccctgagaacaaattctacaaga tgcatcaatgcaaagaaaatagagacatgatgtgcaaacgccgactagacttttctggtcagcaaactgactatcttggt ctgcagaaacctccgactgttgcagtagcaaggcgcaacgaaagagagagaaaccgggtaaaactcataaacatgacttt tgcaactttacgcgaacatatcccttctggtgtcaagaaaggcaaaagcaagaaaatgagtaaagtagacacactgaaag ctgcaatagactatattcgttttctccaagagatggtagacgagcacgatgccgtcaatgctgttttggataagaattgc cagcccaaaccagatatccgtgtggttcctgcctcaccctccgtcagttcacccacccctagcatcagttcagatacctc acatgatggtgcggtgctcagcgcagaggaggaagatctgctagacttcaccaactggttctga |
|
Protein
| Protein ID | pfu_aug1.0_5392.1_45198.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5392.1_45198.t1 MGSDPRLLDYGMTDLSTINGQALYHGFVTDRPSCMYSSSPESSPSTPENKFYKMHQCKENRDMMCKRRLDFSGQQTDYLG LQKPPTVAVARRNERERNRVKLINMTFATLREHIPSGVKKGKSKKMSKVDTLKAAIDYIRFLQEMVDEHDAVNAVLDKNC QPKPDIRVVPASPSVSSPTPSISSDTSHDGAVLSAEEEDLLDFTNWF |
|