Gene
| Gene Model ID | pfu_aug1.0_5392.1_45202 |
|---|---|
| Locus | scaffold5392.1 : 121806 ... 135180 : + |
| To GenomeBrowser | scaffold5392.1:121806..135180 |
| Genes list of scaffold | scaffold5392.1 |
| Synonym | pfu_aug2.0_83.1_10235 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5392.1_45202.t1 | 4 | 1 | zf-C2H2 | 323 | 345 | 1.1e-16 | 60.0 | 4.8e-06 | 0.0089 | 16.3 |
| pfu_aug1.0_5392.1_45202.t1 | 4 | 1 | zf-C2H2_4 | 323 | 345 | 1.3e-13 | 50.2 | 0.00017 | 0.31 | 11.4 |
| pfu_aug1.0_5392.1_45202.t1 | 4 | 1 | zf-H2C2_2 | 323 | 331 | 1.8e-11 | 43.7 | 0.02 | 38.0 | 4.8 |
| pfu_aug1.0_5392.1_45202.t1 | 4 | 2 | zf-H2C2_2 | 337 | 368 | 1.8e-11 | 43.7 | 4.7e-05 | 0.087 | 13.1 |
| pfu_aug1.0_5392.1_45202.t1 | 4 | 2 | zf-C2H2 | 357 | 379 | 1.1e-16 | 60.0 | 1.3e-06 | 0.0025 | 18.0 |
| pfu_aug1.0_5392.1_45202.t1 | 4 | 2 | zf-C2H2_4 | 357 | 379 | 1.3e-13 | 50.2 | 5.5e-07 | 0.001 | 19.2 |
| pfu_aug1.0_5392.1_45202.t1 | 4 | 3 | zf-H2C2_2 | 372 | 396 | 1.8e-11 | 43.7 | 1.6e-06 | 0.003 | 17.7 |
| pfu_aug1.0_5392.1_45202.t1 | 4 | 3 | zf-C2H2 | 387 | 407 | 1.1e-16 | 60.0 | 6.3e-07 | 0.0012 | 19.0 |
| pfu_aug1.0_5392.1_45202.t1 | 4 | 3 | zf-C2H2_4 | 387 | 407 | 1.3e-13 | 50.2 | 1.2e-05 | 0.022 | 15.0 |
| pfu_aug1.0_5392.1_45202.t1 | 4 | 4 | zf-H2C2_2 | 399 | 424 | 1.8e-11 | 43.7 | 5.2e-09 | 9.6e-06 | 25.6 |
| pfu_aug1.0_5392.1_45202.t1 | 4 | 4 | zf-C2H2 | 413 | 435 | 1.1e-16 | 60.0 | 1.7e-08 | 3.1e-05 | 24.0 |
| pfu_aug1.0_5392.1_45202.t1 | 4 | 4 | zf-C2H2_4 | 413 | 433 | 1.3e-13 | 50.2 | 2.8e-07 | 0.00052 | 20.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5392.1_45202.t1 | gi|334328883|ref|XP_001375603.2| | 3.0e-22 |
Transcript
| Transcript ID | pfu_aug1.0_5392.1_45202.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5392.1_45202.t1 atggcagaggctcatggagggaacagagagcaggagtccatagatcttcagctgaagtcattggtatcacagatcaatac cagcactgatgactttgacatggatgtggccgatgcccccaccctccccataccgacagtggctaaaaatatgtccagca gtgatgtggcagtgtccagtctgctaagcttctcacagggtccagctacaggtcagggtgcagggacaagtcctttctac aatgatgggggatttaagcaggagggatctgtgtctcagtttggaatccttccatccagacctcaggataagattcctca gagcaatggacttgctgcatccctcgaagcacaacagaatgtagggcaatctaacggtttccctcagagtgcctcacaat ctaatcctacccagcaaggttcagatcagtctatggaccaagctgcaaattcatttgcctttaaatcggaaccagcactt cctactgcattccctggggacgacggagataaaatacagatcaagaaggaaaatttagatactttagctcaagtaggatt aaaacctatggaggaatcagagatagaaagaagaaacatcgcagtggcaggatttgcagcactgaatggtcaggacccaa tagttaggaagagtataaggcagcctaagaagaaaatgatccaagattatgtggagtttagtaattctctagggatggag gaaggggaggaaaataaaggtggggttcaagatgaggtcgctgtggagaatgaagatgagccagtgaagaagaaaggaaa acgaggaagaaaaccgaagtctggtaagggaaagaaggcagctaaagcaaaactagatgtggatgaagtatacaggagtg atgatgatgaagaaaaagagaaggctgaaggagaagaaggacaggaggatgatctgaacagggatttgatgaaggttagg atgatgaaatgtgataagtgtgacaaacattttctggacagaagtaaattaaggatgcaccagagagcagcacacaaacc taaacgtgtgatgaacgaagacactgattatcactgttctgaatgtggtaagatatttaaacgacgagaacactggcgtc gtcataaagaagtacatgaggtatccagacctcatatctgtataacatgtggcaaggctttcaagaggttggagcactta aaacgacatcagagtgtccattttactgacaaaccattcccatgcgacgaatgtggtaaggctttcacaaggagggacca tttagctaaacataaactactacacgagtcagggggactgatcaaaccattcgctcataagaagtccagaaagaggaaga gggatgaaagtgaagaaaaggattccacggaggcaaccaacgtgaaggggagtcgtaaacggaaaataacggtacagctt aaggcacggaaagtggaatctccagtaagggaggaagattaccttgatgataaagaagcacaaagcagcgatttcttatc ttctgatgacgagccacttggttctccaaaaaaaagtgttgctttaagaaggtaa |
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Protein
| Protein ID | pfu_aug1.0_5392.1_45202.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5392.1_45202.t1 MAEAHGGNREQESIDLQLKSLVSQINTSTDDFDMDVADAPTLPIPTVAKNMSSSDVAVSSLLSFSQGPATGQGAGTSPFY NDGGFKQEGSVSQFGILPSRPQDKIPQSNGLAASLEAQQNVGQSNGFPQSASQSNPTQQGSDQSMDQAANSFAFKSEPAL PTAFPGDDGDKIQIKKENLDTLAQVGLKPMEESEIERRNIAVAGFAALNGQDPIVRKSIRQPKKKMIQDYVEFSNSLGME EGEENKGGVQDEVAVENEDEPVKKKGKRGRKPKSGKGKKAAKAKLDVDEVYRSDDDEEKEKAEGEEGQEDDLNRDLMKVR MMKCDKCDKHFLDRSKLRMHQRAAHKPKRVMNEDTDYHCSECGKIFKRREHWRRHKEVHEVSRPHICITCGKAFKRLEHL KRHQSVHFTDKPFPCDECGKAFTRRDHLAKHKLLHESGGLIKPFAHKKSRKRKRDESEEKDSTEATNVKGSRKRKITVQL KARKVESPVREEDYLDDKEAQSSDFLSSDDEPLGSPKKSVALRR |
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