Gene
| Gene Model ID | pfu_aug1.0_5396.1_67237 |
|---|---|
| Locus | scaffold5396.1 : 758 ... 16525 : - |
| To GenomeBrowser | scaffold5396.1:758..16525 |
| Genes list of scaffold | scaffold5396.1 |
| Synonym | pfu_aug2.0_37.1_23296 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5396.1_67237.t1 | 4 | 1 | dsrm | 277 | 312 | 4.3e-35 | 120.1 | 1.1e-08 | 8.5e-05 | 23.0 |
| pfu_aug1.0_5396.1_67237.t1 | 4 | 2 | dsrm | 345 | 408 | 4.3e-35 | 120.1 | 3.1e-15 | 2.3e-11 | 44.0 |
| pfu_aug1.0_5396.1_67237.t1 | 4 | 3 | dsrm | 452 | 516 | 4.3e-35 | 120.1 | 5.5e-14 | 4.1e-10 | 40.1 |
| pfu_aug1.0_5396.1_67237.t1 | 4 | 4 | dsrm | 576 | 637 | 4.3e-35 | 120.1 | 0.00082 | 6.0 | 7.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5396.1_67237.t1 | gi|325296829|ref|NP_001191656.1| | neuron-specific staufen [Aplysia californica] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5396.1_67237.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5396.1_67237.t1 atgaaaaagcaaaatagaaatgtcacatcatattcatcaagtggaatgggcgtacaacaacagtatcaaccacaaatggc ccatcctcaagtccaagtaaccaatcaacatatgacaatggggacacactcccaacaaaacagacagaagggaaacatga tgggggtaggcatcataaaaaattccaccccaaattcactgccaaataatcaaatgatgccttcctccaactcgtaccca tcaacacaacacagcgttgccggaatgcaccagatgaaccataccaatgcagtcagtcaatcgtcagtgccgatttcaag tcaaaatggatcagtcagtgtttcggtagcaacatctaagcaacacattgtagtaaccccaaatgatggtcagcaacaga ccaatacgcaatcagcaacacagcagaatgcaacaacagatcaaacgcaacccaacgctacagggaccgttttatccgat caattatccacggaacaggaagacagcaatggatctgaagcttcacaaggcttggcaaacacaaaagagaaaaccccaat gtgcttaattaatgagttagcccgatacaacaaaacaaaagagggtcaatcaccctctttgggaaatgaaaaagaggact tcaacacagagactatgggggatgggcagccagtcacacctactgtcaagttaaatgctctggcaatgaaaagaggggag caaacctactataaacccatagaaacccggacccctcagcagtattaccctcctcctaattacaactacagaggaatgtt taatcaaaggtatcactatcccagaattccacgtgtgttctacgtctcccttaaagttggtgctagagagtttgtaggtg aaggtcccacacgacaagaggctcgacacgacgctgccaagaaagcgctaggtatactagagaaattaccagtgccgaat gaggaggaaaggaagatcgaatgcccagtagatttaccaactgacgcagaaaaagacaatctgaaatcagagatcagcct tgtacatgagattgccttaaaaaggaaccttagtgttggatttgaagtgactcgagagtctggtcctccccacatgaaaa cctttgtaacatgctgtaaagttggagattatctaacagagtccgagggtaacagtaaaaaagtttccaaaaagaaagca gcggagatgatgctagaaaaacttaaagagttacctcccttgccaccgagtgtttcacgccttagaaacaaacctattgt aaaaaagaagaataaaaatctcatcaagcaacaagtacaaaaggcagatcctaactatggagtgggtataaatcccatca gtcgactcatacagatccagcaggctcagcagaagaaagaaccggtatataccctggtcactgagcgggggctgccacga cggagagaatttgttatacaggtacaagtagacgaccaggcttgcacaggagtaggaccgaataaaaagttggccaaacg gcatgcagcagaggccatgttgacgttgctaggttacaataaaccttcccctcagcccaccaaacctgccatcaaaacag ctagtactcctgagggtagttcagagaaaaaagttaccttccaggagagtacagatgaatctggacaaaatcatgtaggt gattatacagcatttgctaatgtttccaaaagaccagaaattacacttagagaactggcgtcagctaacggcttagagat taagtttgatgaattccagtcacagacaaactcccagcagagtgagtacctgagtagagtgaccttgttattcaccccgc ctcgtgtgttccacgggagtgggggaaacgctgaagcagcaagagacctggctgcccttgaagctctcaagtttctccat gagatgggaaaaggtgatggatatgatatcaacatttttcattcatag |
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Protein
| Protein ID | pfu_aug1.0_5396.1_67237.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5396.1_67237.t1 MKKQNRNVTSYSSSGMGVQQQYQPQMAHPQVQVTNQHMTMGTHSQQNRQKGNMMGVGIIKNSTPNSLPNNQMMPSSNSYP STQHSVAGMHQMNHTNAVSQSSVPISSQNGSVSVSVATSKQHIVVTPNDGQQQTNTQSATQQNATTDQTQPNATGTVLSD QLSTEQEDSNGSEASQGLANTKEKTPMCLINELARYNKTKEGQSPSLGNEKEDFNTETMGDGQPVTPTVKLNALAMKRGE QTYYKPIETRTPQQYYPPPNYNYRGMFNQRYHYPRIPRVFYVSLKVGAREFVGEGPTRQEARHDAAKKALGILEKLPVPN EEERKIECPVDLPTDAEKDNLKSEISLVHEIALKRNLSVGFEVTRESGPPHMKTFVTCCKVGDYLTESEGNSKKVSKKKA AEMMLEKLKELPPLPPSVSRLRNKPIVKKKNKNLIKQQVQKADPNYGVGINPISRLIQIQQAQQKKEPVYTLVTERGLPR RREFVIQVQVDDQACTGVGPNKKLAKRHAAEAMLTLLGYNKPSPQPTKPAIKTASTPEGSSEKKVTFQESTDESGQNHVG DYTAFANVSKRPEITLRELASANGLEIKFDEFQSQTNSQQSEYLSRVTLLFTPPRVFHGSGGNAEAARDLAALEALKFLH EMGKGDGYDINIFHS |
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