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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_53978.1_05544
Locus scaffold53978.1 : 1 ... 4170 : -
To GenomeBrowser scaffold53978.1:1..4170
Genes list of scaffold scaffold53978.1
Synonym pfu_aug2.0_201.1_03785

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_53978.1_05544.t1 2 1 Carb_kinase 40 63 7.4e-09 35.2 6.8e-08 0.001 18.4
pfu_aug1.0_53978.1_05544.t1 2 2 Carb_kinase 64 96 7.4e-09 35.2 3.9e-07 0.0058 15.9

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_53978.1_05544.t1 gi|324517647|gb|ADY46882.1| 3.0e-16

Transcript
Transcript IDpfu_aug1.0_53978.1_05544.t1
Definition-
>pfu_aug1.0_53978.1_05544.t1
gatcatcactgatgagtgccagccatgcaagctacatcaagcctggaatcgtcctggacatggtcaagtccattatacct
gaactgaccactgacctgcacaaaggcatgatgggaagggtcgtggtggtaggaggatgcaaggagtatacaggtgcacc
atattatgctgccatttcttccctgaaattggatggtttacacttggtcacagaatttcctgatgttgtgaggggatata
aaaaagccattctgactcctaatgttgtagaattctccagactatataacaaactg

Protein
Protein IDpfu_aug1.0_53978.1_05544.t1
Definition-
>pfu_aug1.0_53978.1_05544.t1
SSLMSASHASYIKPGIVLDMVKSIIPELTTDLHKGMMGRVVVVGGCKEYTGAPYYAAISSLKLDGLHLVTEFPDVVRGYK
KAILTPNVVEFSRLYNKL

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