Gene
| Gene Model ID | pfu_aug1.0_5405.1_59765 |
|---|---|
| Locus | scaffold5405.1 : 40688 ... 61248 : - |
| To GenomeBrowser | scaffold5405.1:40688..61248 |
| Genes list of scaffold | scaffold5405.1 |
| Synonym | pfu_aug2.0_344.1_14022 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5405.1_59765.t1 | 2 | 1 | Ank_2 | 5 | 94 | 1.4e-33 | 115.1 | 2.0e-22 | 3.6e-19 | 68.8 |
| pfu_aug1.0_5405.1_59765.t1 | 5 | 1 | Ank_3 | 6 | 25 | 1.6e-22 | 77.3 | 0.69 | 1300.0 | 0.2 |
| pfu_aug1.0_5405.1_59765.t1 | 3 | 1 | Ank_4 | 6 | 51 | 2.7e-19 | 69.1 | 2.2e-05 | 0.04 | 14.4 |
| pfu_aug1.0_5405.1_59765.t1 | 4 | 1 | Ank_5 | 22 | 61 | 2.7e-23 | 81.4 | 7.8e-08 | 0.00015 | 21.9 |
| pfu_aug1.0_5405.1_59765.t1 | 4 | 1 | Ank | 31 | 62 | 6.0e-32 | 107.8 | 4.3e-09 | 7.9e-06 | 25.4 |
| pfu_aug1.0_5405.1_59765.t1 | 5 | 2 | Ank_3 | 31 | 55 | 1.6e-22 | 77.3 | 1.1e-05 | 0.021 | 15.0 |
| pfu_aug1.0_5405.1_59765.t1 | 4 | 2 | Ank | 65 | 94 | 6.0e-32 | 107.8 | 4.1e-13 | 7.6e-10 | 38.1 |
| pfu_aug1.0_5405.1_59765.t1 | 4 | 2 | Ank_5 | 65 | 104 | 2.7e-23 | 81.4 | 4.5e-09 | 8.3e-06 | 25.8 |
| pfu_aug1.0_5405.1_59765.t1 | 5 | 3 | Ank_3 | 65 | 91 | 1.6e-22 | 77.3 | 4.6e-08 | 8.6e-05 | 22.4 |
| pfu_aug1.0_5405.1_59765.t1 | 3 | 2 | Ank_4 | 65 | 109 | 2.7e-19 | 69.1 | 7.7e-11 | 1.4e-07 | 31.7 |
| pfu_aug1.0_5405.1_59765.t1 | 4 | 3 | Ank_5 | 87 | 137 | 2.7e-23 | 81.4 | 1.5e-10 | 2.9e-07 | 30.5 |
| pfu_aug1.0_5405.1_59765.t1 | 2 | 2 | Ank_2 | 98 | 149 | 1.4e-33 | 115.1 | 1.7e-14 | 3.1e-11 | 43.4 |
| pfu_aug1.0_5405.1_59765.t1 | 4 | 3 | Ank | 98 | 128 | 6.0e-32 | 107.8 | 1.1e-11 | 2.0e-08 | 33.6 |
| pfu_aug1.0_5405.1_59765.t1 | 5 | 4 | Ank_3 | 98 | 124 | 1.6e-22 | 77.3 | 2.0e-08 | 3.7e-05 | 23.5 |
| pfu_aug1.0_5405.1_59765.t1 | 3 | 3 | Ank_4 | 98 | 149 | 2.7e-19 | 69.1 | 1.6e-10 | 3.0e-07 | 30.7 |
| pfu_aug1.0_5405.1_59765.t1 | 4 | 4 | Ank_5 | 116 | 150 | 2.7e-23 | 81.4 | 3.1e-07 | 0.00057 | 20.0 |
| pfu_aug1.0_5405.1_59765.t1 | 4 | 4 | Ank | 131 | 149 | 6.0e-32 | 107.8 | 0.033 | 61.0 | 3.7 |
| pfu_aug1.0_5405.1_59765.t1 | 5 | 5 | Ank_3 | 131 | 149 | 1.6e-22 | 77.3 | 0.0016 | 2.9 | 8.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5405.1_59765.t1 | gi|326926645|ref|XP_003209509.1| | PREDICTED: GA-binding protein subunit beta-1 [Meleagris gallopavo] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_5405.1_59765.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5405.1_59765.t1 gtaaacgtctgttagatgctgccaagaggggcgagacagaagatgttagaaccttgatgtccaatggggctccctttact acagactggttaggaacatctcccttacactttgcctctcagtttggtcatgtagatacagcagaggttctattgagagc agggataagtagggacgctcgtactaaggtagacagaacgccactccacgtggcatcacaggaaggtcatgtggatattg tggagctactcatagcacactccgctgatgtggatgccaaagacatgttaaagatgacaccattacactgggccacagag aagggtcatcctcttgtgatggagacactaattaaacatggagcagatgtcaactgtgaaaacaagtttgacagaacacc tatagatattgccattgtaaatggccgtgcagatttagcagaaatcctccagctagctatgcacacccagataggagcaa tgatggacacagtgacagtgtcaacagatggagaagtagaaactaacaacattgagactgttaccgtcacaacatcggac gttgcagcctcggaatcagaagagacgacagatcagaccaattcctctgtgttagctaccctagctgccttagcagaagc tacagcacctaactctggatcacaagccagtgccaatgccacagacactgttagttggttagagagccaaggaataacca tgattactacaaccgatggtggaattatatcatcagccatggaaagtgggcaatcactggcactcactgattccacagat gaaccaccacagaagaagctgaaatctgatattaaagaagaaagtttggattcatatgaaaaagacgatctgaaacgaca gttagaggaaatgcagaagcaggctgagacttacaaactgcagctcaaacaaaaagaaatagaggcagaggagtataaaa agaagttaaacgaaagtatgggtgacactgaagctggggagagtggtgattga |
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Protein
| Protein ID | pfu_aug1.0_5405.1_59765.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5405.1_59765.t1 KRLLDAAKRGETEDVRTLMSNGAPFTTDWLGTSPLHFASQFGHVDTAEVLLRAGISRDARTKVDRTPLHVASQEGHVDIV ELLIAHSADVDAKDMLKMTPLHWATEKGHPLVMETLIKHGADVNCENKFDRTPIDIAIVNGRADLAEILQLAMHTQIGAM MDTVTVSTDGEVETNNIETVTVTTSDVAASESEETTDQTNSSVLATLAALAEATAPNSGSQASANATDTVSWLESQGITM ITTTDGGIISSAMESGQSLALTDSTDEPPQKKLKSDIKEESLDSYEKDDLKRQLEEMQKQAETYKLQLKQKEIEAEEYKK KLNESMGDTEAGESGD |
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