Gene
| Gene Model ID | pfu_aug1.0_5420.1_59767 |
|---|---|
| Locus | scaffold5420.1 : 1 ... 40878 : + |
| To GenomeBrowser | scaffold5420.1:1..40878 |
| Genes list of scaffold | scaffold5420.1 |
| Synonym | pfu_aug2.0_423.1_10757 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5420.1_59767.t1 | 9 | 1 | Laminin_EGF | 24 | 46 | 2.3e-33 | 113.8 | 1.8e-05 | 0.023 | 14.6 |
| pfu_aug1.0_5420.1_59767.t1 | 9 | 2 | Laminin_EGF | 58 | 105 | 2.3e-33 | 113.8 | 3.7e-13 | 4.6e-10 | 39.2 |
| pfu_aug1.0_5420.1_59767.t1 | 9 | 3 | Laminin_EGF | 108 | 163 | 2.3e-33 | 113.8 | 1.5e-06 | 0.0019 | 18.1 |
| pfu_aug1.0_5420.1_59767.t1 | 9 | 4 | Laminin_EGF | 171 | 194 | 2.3e-33 | 113.8 | 6.8e-05 | 0.084 | 12.8 |
| pfu_aug1.0_5420.1_59767.t1 | 1 | 1 | Laminin_B | 247 | 383 | 1.4e-21 | 76.4 | 2.3e-24 | 2.8e-21 | 75.5 |
| pfu_aug1.0_5420.1_59767.t1 | 9 | 5 | Laminin_EGF | 384 | 410 | 2.3e-33 | 113.8 | 8.6e-07 | 0.0011 | 18.8 |
| pfu_aug1.0_5420.1_59767.t1 | 9 | 6 | Laminin_EGF | 418 | 465 | 2.3e-33 | 113.8 | 1.8e-13 | 2.2e-10 | 40.2 |
| pfu_aug1.0_5420.1_59767.t1 | 9 | 7 | Laminin_EGF | 468 | 525 | 2.3e-33 | 113.8 | 8.1e-05 | 0.1 | 12.5 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 1 | Ig_3 | 533 | 606 | 9.0e-30 | 102.9 | 1.9e-12 | 2.3e-09 | 37.5 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 1 | I-set | 534 | 619 | 0.0 | 179.6 | 1.4e-18 | 1.7e-15 | 56.6 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 1 | Ig_2 | 534 | 618 | 1.4013e-43 | 146.8 | 1.3e-11 | 1.7e-08 | 34.4 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 1 | V-set | 542 | 606 | 8.2e-21 | 74.0 | 7.4e-08 | 9.1e-05 | 22.3 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 1 | ig | 548 | 604 | 1.4e-29 | 102.0 | 1.6e-10 | 2.0e-07 | 31.0 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 2 | Ig_2 | 630 | 713 | 1.4013e-43 | 146.8 | 1.2e-10 | 1.5e-07 | 31.4 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 2 | I-set | 631 | 713 | 0.0 | 179.6 | 1.7e-11 | 2.1e-08 | 33.8 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 2 | V-set | 632 | 703 | 8.2e-21 | 74.0 | 2.1e-06 | 0.0026 | 17.6 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 2 | Ig_3 | 634 | 699 | 9.0e-30 | 102.9 | 6.6e-07 | 0.00081 | 19.8 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 2 | ig | 641 | 697 | 1.4e-29 | 102.0 | 2.9e-07 | 0.00036 | 20.5 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 3 | Ig_3 | 720 | 790 | 9.0e-30 | 102.9 | 7.1e-07 | 0.00087 | 19.7 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 3 | I-set | 722 | 802 | 0.0 | 179.6 | 3.9e-14 | 4.8e-11 | 42.3 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 3 | Ig_2 | 724 | 801 | 1.4013e-43 | 146.8 | 1.1e-10 | 1.4e-07 | 31.5 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 3 | ig | 734 | 788 | 1.4e-29 | 102.0 | 3.2e-05 | 0.04 | 14.0 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 3 | V-set | 751 | 790 | 8.2e-21 | 74.0 | 0.026 | 32.0 | 4.4 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 4 | Ig_2 | 816 | 896 | 1.4013e-43 | 146.8 | 7.9e-10 | 9.8e-07 | 28.8 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 4 | Ig_3 | 821 | 880 | 9.0e-30 | 102.9 | 0.00029 | 0.36 | 11.3 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 4 | ig | 826 | 880 | 1.4e-29 | 102.0 | 0.00011 | 0.13 | 12.3 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 4 | I-set | 857 | 896 | 0.0 | 179.6 | 0.00014 | 0.17 | 11.7 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 4 | V-set | 857 | 896 | 8.2e-21 | 74.0 | 0.00036 | 0.44 | 10.4 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 5 | Ig_3 | 892 | 947 | 9.0e-30 | 102.9 | 7.7e-07 | 0.00095 | 19.6 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 5 | I-set | 893 | 960 | 0.0 | 179.6 | 1.4e-10 | 1.8e-07 | 30.9 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 5 | Ig_2 | 902 | 960 | 1.4013e-43 | 146.8 | 1.2e-07 | 0.00015 | 21.7 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 5 | ig | 903 | 945 | 1.4e-29 | 102.0 | 3.9e-07 | 0.00048 | 20.1 |
| pfu_aug1.0_5420.1_59767.t1 | 5 | 5 | V-set | 920 | 948 | 8.2e-21 | 74.0 | 3.0e-05 | 0.036 | 13.9 |
| pfu_aug1.0_5420.1_59767.t1 | 9 | 8 | Laminin_EGF | 991 | 1024 | 2.3e-33 | 113.8 | 0.58 | 720.0 | 0.2 |
| pfu_aug1.0_5420.1_59767.t1 | 9 | 9 | Laminin_EGF | 1032 | 1057 | 2.3e-33 | 113.8 | 0.24 | 300.0 | 1.4 |
| pfu_aug1.0_5420.1_59767.t1 | 1 | 1 | Laminin_G_3 | 1087 | 1168 | 4.8e-06 | 26.8 | 1.7e-08 | 2.2e-05 | 24.7 |
| pfu_aug1.0_5420.1_59767.t1 | 1 | 1 | Laminin_G_2 | 1096 | 1173 | 1.3e-12 | 47.8 | 2.1e-15 | 2.6e-12 | 46.8 |
| pfu_aug1.0_5420.1_59767.t1 | 1 | 1 | Laminin_G_1 | 1098 | 1170 | 2.1e-14 | 53.6 | 4.8e-17 | 6.0e-14 | 52.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5420.1_59767.t1 | gi|344256104|gb|EGW12208.1| | Basement membrane-specific heparan sulfate proteoglycan core protein [Cricetulus griseus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5420.1_59767.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5420.1_59767.t1 tattcgtgacgtcatcatggacattgccgaggaccgtgtcacaggcagggaccgagcctatgctgtagagcagtgtcagt gtcccagaggttacaagggattatcttgtgaggactgtgacatagggtataagaggacacagggcggactgtatctagga ttctgtgagagatgcgagtgtaacggccactcaagcgagtgtgaccccgagacaggagtatgtaggaactgtcaacataa cactgagggtgatagatgtgagcgttgttccgctggttactatggtaacgctacaggaggcacaccctctgactgtcagc cttgtccatgccccctcccccaggctccaaaccagttcagccccacatgtatattagacacagatggacaggtgacttgc actgcctgccccgcaggtcatactggtaggagatgtgagagctgtatccagggctatactggtaatccattgcaaccggg agattactgtaaaattgatacaggaccagactgtcagtgtgatgccagaggtactgtaccgaacacacaatgtgaccctg ttagccgacagtgccagtgtaaggtataccccaatctgtcaggctcagatacccataattttgtattgaccaatcgccga ctgaccaacgtaatatctgacggattcactgtggacaccgacaggagagctattacgtttaatgcgttttccggagtaca gagggagagagaaagcctattcttcagtcttcctccaaagtttaggggcaatcaggtgacatcatatggaggacagttga ccttcactatagaaacaaatgtagctttggacgctggacaaacgttcagggacgtagatttcgaaatagtgaccagcggc cagagacagaggatgtactacctgtttaacccacctctccgaccgttcgagtcacggacatacaccatcaagcttgtaga gtcttcattccgatcactggacggttctgagcccacacggaacaccttcatggcggtactgtccgacatagaagccatct tgatccgagccacctaccacagcatcatgggaagtgcaaccctacgtgacctccatatggacacggctgtagctggccca acgggctatggccgggccttggacgttgagagctgtcgttgcccacccggctatactggcttgtcttgtgagcagtgtgc tgcgggctacgtgagacaggattcaggggcgcggcagggagagtgtgttagatgtaattgtaatggacacgcttcgtcat gcgacactacaactggagaatgcttgaattgtcaacataacactgttggagatcgttgtgagagatgtgcggatggtttc tatggtgacgccacatcaggaacacccaatgactgccgaccttgtccatgtcctcttactctaccgtccaatcgattctc cactacttgccacttggacaatgatggtcaggtgacctgtgataggtgtccaccaggctatctaggaagggactgtggaa catgtgacacagccaatggttatactggaaatcctagagaagttggtggaaaatgtactagggatacagtaattctacga ccaaggatcaccgtcaacccagtacgagtagaggaatctgtaggtcagaccattgttatacaatgtaatgttcgtggtcc gggaccgtttaacgtcgtatggagtagagagaatggccagcagctgtccagccggtcgcaggtcagtccgagttatacac tgaccattagaaatctgatgaaatctgacgagggacgttacgtgtgtacggcaaccaacatacatggcagcaccagggag actgtatcagtcattgttataggagataaacagccaatcagagtgagaatagaggaaccaaaagatgccacggtggatga ggggacgtctgttagatttgtctgtgtagctacaggatctcttactcagatgacgtacattctatcatggacgagacaag gtggtcgtctaccatccaaggccatagataataacggagtactagtaattccgaatgcccaggctgaagatcagggaacc tacatttgtaccggctcagatatgatgtctaccgataccgcagtagcaacactcacagttagcagaagtgaaacggcacc catcgtacgcatcgagccacgttaccagacagtgaaggagggagagctcgtagaattccgatgtatcgccaatggacgtc ccacccctgtggtagaatggcgtagaagttccggcaggattaacccacaagctaccatcagtaacggagttctacgcatt ccgtttgccttacgatctgatgaagctcagtatttctgtaaagccacaaatgtcgctggaacaaacgaagtcagaaccat tctttatgtaacagaaggagatattcgtccagacgtaacagtaattattcgacagacatcagtaattgccgtgattggat ccaccacacagctcgtatgttatgtagatgacgactctctccgtgcaactttggtgtggtcacgtgttggagggctcccg acaggctcaagccaagataacggagtgctgactctcaacaacatacagccatcatatgctggtcgatacgtgtgtacggc tatcacgtcagatggagacaggggtaccggcacagccacggtcactgtacagcaaaatactataagtacacctaagccaa cggtgaaatggtcacgattggatggtccgctaccagtgtcttccacggttaatgacgtttacctcgtcattccacaggtg agactggaagatgccggtacgtacgtgtgtacagcggaaaatgtggtcggcattgacgaacagagagtcaacttgtttgt aagagttaagggagtggacgttaacttagggtctgagtacatagacatgcagggtgtagagccgtacaacgcgtgtctgg agcgaccgtgcatgaatcgtggacaatgtcaggcagctaatacaccctatggttaccggtgcgtctgtactcagggattc acaggtcaacagtgtgaggcagcaggtcaaggctgttacccaggtgtctgtggaccaacaggtcgttgccatgacgtcgc caatggttaccaatgtatctgtccaatgggaagaataggacctggatgccagaatgtgttgcagattgtaaatccacagt tcaacgttacatcctttgcatcataccccaccattcgtggagccagattcattatgaggatagaactagagttcaagccg cagtctcttgatgacggaatcgttatgtacagtggacagagtgacgacggaagtggagattactttgttattatgctaca agatggccatcttaacttcagatataacactggctctggaccagccaccctgaagagtcgtcagaagcttcgtgtagatg aatgggtcaaggtcactgtgtctaaatcaggacaggatggtagacttatcgtcaacgatcagtcacctgtgacagcctgg cccggcagttattacagcaatctgcgcgatacctactacaattattatctgcgcagacggtatcgctataaacgaggaat aatggagtgtgtagcatatccagtaatggatacagatgtgactgcccactgggcttcatgggcaggaactgtgaagctga tgtag |
|
Protein
| Protein ID | pfu_aug1.0_5420.1_59767.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5420.1_59767.t1 IRDVIMDIAEDRVTGRDRAYAVEQCQCPRGYKGLSCEDCDIGYKRTQGGLYLGFCERCECNGHSSECDPETGVCRNCQHN TEGDRCERCSAGYYGNATGGTPSDCQPCPCPLPQAPNQFSPTCILDTDGQVTCTACPAGHTGRRCESCIQGYTGNPLQPG DYCKIDTGPDCQCDARGTVPNTQCDPVSRQCQCKVYPNLSGSDTHNFVLTNRRLTNVISDGFTVDTDRRAITFNAFSGVQ RERESLFFSLPPKFRGNQVTSYGGQLTFTIETNVALDAGQTFRDVDFEIVTSGQRQRMYYLFNPPLRPFESRTYTIKLVE SSFRSLDGSEPTRNTFMAVLSDIEAILIRATYHSIMGSATLRDLHMDTAVAGPTGYGRALDVESCRCPPGYTGLSCEQCA AGYVRQDSGARQGECVRCNCNGHASSCDTTTGECLNCQHNTVGDRCERCADGFYGDATSGTPNDCRPCPCPLTLPSNRFS TTCHLDNDGQVTCDRCPPGYLGRDCGTCDTANGYTGNPREVGGKCTRDTVILRPRITVNPVRVEESVGQTIVIQCNVRGP GPFNVVWSRENGQQLSSRSQVSPSYTLTIRNLMKSDEGRYVCTATNIHGSTRETVSVIVIGDKQPIRVRIEEPKDATVDE GTSVRFVCVATGSLTQMTYILSWTRQGGRLPSKAIDNNGVLVIPNAQAEDQGTYICTGSDMMSTDTAVATLTVSRSETAP IVRIEPRYQTVKEGELVEFRCIANGRPTPVVEWRRSSGRINPQATISNGVLRIPFALRSDEAQYFCKATNVAGTNEVRTI LYVTEGDIRPDVTVIIRQTSVIAVIGSTTQLVCYVDDDSLRATLVWSRVGGLPTGSSQDNGVLTLNNIQPSYAGRYVCTA ITSDGDRGTGTATVTVQQNTISTPKPTVKWSRLDGPLPVSSTVNDVYLVIPQVRLEDAGTYVCTAENVVGIDEQRVNLFV RVKGVDVNLGSEYIDMQGVEPYNACLERPCMNRGQCQAANTPYGYRCVCTQGFTGQQCEAAGQGCYPGVCGPTGRCHDVA NGYQCICPMGRIGPGCQNVLQIVNPQFNVTSFASYPTIRGARFIMRIELEFKPQSLDDGIVMYSGQSDDGSGDYFVIMLQ DGHLNFRYNTGSGPATLKSRQKLRVDEWVKVTVSKSGQDGRLIVNDQSPVTAWPGSYYSNLRDTYYNYYLRRRYRYKRGI MECVAYPVMDTDVTAHWASWAGTVKLM |
|