Gene
| Gene Model ID | pfu_aug1.0_5422.1_52533 |
|---|---|
| Locus | scaffold5422.1 : 21964 ... 32587 : - |
| To GenomeBrowser | scaffold5422.1:21964..32587 |
| Genes list of scaffold | scaffold5422.1 |
| Synonym | pfu_aug2.0_83.1_10247 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5422.1_52533.t1 | 2 | 1 | PIH1 | 5 | 72 | 6.4e-36 | 124.4 | 3.4e-24 | 5.0e-20 | 72.2 |
| pfu_aug1.0_5422.1_52533.t1 | 2 | 2 | PIH1 | 94 | 144 | 6.4e-36 | 124.4 | 1.3e-17 | 2.0e-13 | 50.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5422.1_52533.t1 | gi|226372166|gb|ACO51708.1| | PIH1 domain-containing protein 1 [Rana catesbeiana] | 5.0e-17 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5422.1_52533.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5422.1_52533.t1 gtatttttcacttcaggattttgtttgaagacaaagaaagagggtggagaaaaagtttttatcaatgtctgccagtcaga aagtgttccacaagctaaggacatcacagaagaagaattgttaaaacttcttgactctgatgatcctttcggtttccgag tgccgatgagtattggagaacctcatgcagaactcgataaaagtaaagaacactttctgctttcagtgatttacatgtat gactggagtagtgataaagatatcaaagtgggaggtaccatgtctgtggacataggggaagacaggatacttttacaaac cagatcaaacaaatattacttagatatatacctaccataccttctagtacaagatgactgtgcagcccagttcaatagga aaacaaggatattaactttgactttacctgttcagccagagggatga |
|
Protein
| Protein ID | pfu_aug1.0_5422.1_52533.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5422.1_52533.t1 VFFTSGFCLKTKKEGGEKVFINVCQSESVPQAKDITEEELLKLLDSDDPFGFRVPMSIGEPHAELDKSKEHFLLSVIYMY DWSSDKDIKVGGTMSVDIGEDRILLQTRSNKYYLDIYLPYLLVQDDCAAQFNRKTRILTLTLPVQPEG |
|