Gene
| Gene Model ID | pfu_aug1.0_5425.1_45214 |
|---|---|
| Locus | scaffold5425.1 : 39296 ... 59145 : + |
| To GenomeBrowser | scaffold5425.1:39296..59145 |
| Genes list of scaffold | scaffold5425.1 |
| Synonym | pfu_aug2.0_61.1_03536 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5425.1_45214.t1 | 6 | 1 | WD40 | 92 | 127 | 1.8e-28 | 97.3 | 2.7e-09 | 4.0e-05 | 23.3 |
| pfu_aug1.0_5425.1_45214.t1 | 6 | 2 | WD40 | 133 | 170 | 1.8e-28 | 97.3 | 1.1e-11 | 1.7e-07 | 30.8 |
| pfu_aug1.0_5425.1_45214.t1 | 6 | 3 | WD40 | 214 | 240 | 1.8e-28 | 97.3 | 0.00019 | 2.8 | 7.9 |
| pfu_aug1.0_5425.1_45214.t1 | 6 | 4 | WD40 | 269 | 289 | 1.8e-28 | 97.3 | 0.004 | 60.0 | 3.7 |
| pfu_aug1.0_5425.1_45214.t1 | 6 | 5 | WD40 | 320 | 338 | 1.8e-28 | 97.3 | 0.00023 | 3.5 | 7.6 |
| pfu_aug1.0_5425.1_45214.t1 | 6 | 6 | WD40 | 351 | 384 | 1.8e-28 | 97.3 | 1.2e-10 | 1.8e-06 | 27.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5425.1_45214.t1 | gi|147904834|ref|NP_001090030.1| | denticleless protein homolog A [Xenopus laevis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5425.1_45214.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5425.1_45214.t1 atgtcagggttgttgaaaagcattttcttaagggaaatatgcacaaagaaccgatatgggacattgaaagctgacctagg agttgtattggaggattttgaaagtttggccacagataaatatgtcactgtcactgatgatgacgggacaatggtaccac ctcttgcatgtgaattctgtaaagtatattccaggagttatattttatgtgttgttgatgaaaaaggagatgctatgtta tatgacacaaggaagactggccagtatgctctgctgaaagtatggcagacccacaccaatgccgtctttgacacagactg gataccgggagaggataaaatactgactgcctctggagatcagactgttgcattatgggacgtatcaacaggacaaagaa ttaacgtttttaggggccacacaagctcagttaggactgttaatgtacagagagatcattctgctgtgtttgccacaggg tctcgtgatggacatataatggtctgggatacaagatgtaccaaaaaggatggatacatacagccagttaacaccattag gaatgtacataccctcccacagtctggtgtgaaagcaaaaagaaagtacaaacttccacctgctagggatagtcagatga gtgtaatagatgtaaaattccagacagacatgcatctatggtcagcaggtgcagtggatggatgtgtaaagttgtgggat ctgcgaaagaattacagtttgacaaaaggagactcgttacccaaacacacctttacctactgtggtgttaacaggaggga acatgggtattccagcctagcttttgactcctctcacagtcagctgtttgccagttgtacagatgacatcatatatcagt ttgatgctgcaggacttaatcacaaaccagcttactgctataaaggccataagaacagtacattttacatcaaggcgagt gtaagtcctgatgaccaattcctgattactggatctacagacgaaatggcatatatctatcaaatagggaagtcaaattt gagtcctgttgtccttaaaggtcatactcaagaagtctcagctgtcagatggtcacctgtagaaatgaataagatcgtga cattgtcagatgattgtatgatgaggatatggcgccttcacagacggcagtctccggcaggtccagaggaggtgacggga actgcagagaggacacatagggaaataggtataacggcagaagagaggcctgtagaaacggagaacattgacccaaacat accacaagctcccagcaaattgcacacgacaatcagtgcaaagtcaccaaaacctgtgtctccctctatcaagagctggc tcaagaaaaacatcacaccagggggcgctgctgatgcggctgggacgtcttctttgtcacttaagaagaatgccaagatt tcaatatttggaaatgaaaaacttccgtgtaaacgaaaactagtggatgatgaggatgaatcagataaagtagaagtcaa tccagcaaagcgcagacatatcaataatagtcctatcaagtcctacagttctagtcccaagaaatttgaaagtccgagaa aagcacaaagccccagaaaacttgaaatcaaatgtagtccccacaaagctatgctcagtccagaactacagggcagggtc ctcaggaatatcggtccaagtttagcctccagactcaacagtccagagaaattagattctgactgtaaggatatacatgt aaatacattaaggaaactaagcagttttgtgccacaatctccaactgtgaacttgccaaacttggtgctagaaggtagtg tgaataaagtcaatttacataatcgaacagaggaaaaagaaaactgtgcaataaaacaaggtaaaaaagactggctaaca aagttacggttagaaaagtacggattgaatgtagatgagagctcaacagaaaatgtatcgcctaaattatctgttagtga aagtacatcacccaaactatctcaatccagccttagctcgggggattcaccacggagtcataaactttcacagagtagtc aaagctcacaggatccggtcagtaatagcggagataataaagccaaactatccaagacaccatctaagggaatgaggtca ttgctccactacttcaaagctaggtga |
|
Protein
| Protein ID | pfu_aug1.0_5425.1_45214.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5425.1_45214.t1 MSGLLKSIFLREICTKNRYGTLKADLGVVLEDFESLATDKYVTVTDDDGTMVPPLACEFCKVYSRSYILCVVDEKGDAML YDTRKTGQYALLKVWQTHTNAVFDTDWIPGEDKILTASGDQTVALWDVSTGQRINVFRGHTSSVRTVNVQRDHSAVFATG SRDGHIMVWDTRCTKKDGYIQPVNTIRNVHTLPQSGVKAKRKYKLPPARDSQMSVIDVKFQTDMHLWSAGAVDGCVKLWD LRKNYSLTKGDSLPKHTFTYCGVNRREHGYSSLAFDSSHSQLFASCTDDIIYQFDAAGLNHKPAYCYKGHKNSTFYIKAS VSPDDQFLITGSTDEMAYIYQIGKSNLSPVVLKGHTQEVSAVRWSPVEMNKIVTLSDDCMMRIWRLHRRQSPAGPEEVTG TAERTHREIGITAEERPVETENIDPNIPQAPSKLHTTISAKSPKPVSPSIKSWLKKNITPGGAADAAGTSSLSLKKNAKI SIFGNEKLPCKRKLVDDEDESDKVEVNPAKRRHINNSPIKSYSSSPKKFESPRKAQSPRKLEIKCSPHKAMLSPELQGRV LRNIGPSLASRLNSPEKLDSDCKDIHVNTLRKLSSFVPQSPTVNLPNLVLEGSVNKVNLHNRTEEKENCAIKQGKKDWLT KLRLEKYGLNVDESSTENVSPKLSVSESTSPKLSQSSLSSGDSPRSHKLSQSSQSSQDPVSNSGDNKAKLSKTPSKGMRS LLHYFKAR |
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