Gene
| Gene Model ID | pfu_aug1.0_5434.1_01987 |
|---|---|
| Locus | scaffold5434.1 : 4926 ... 13072 : + |
| To GenomeBrowser | scaffold5434.1:4926..13072 |
| Genes list of scaffold | scaffold5434.1 |
| Synonym | pfu_aug2.0_364.1_14055 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | cyclooxygenase |
| Description | Best hit to AY004222 (coral).338 bits, 7e-91 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5434.1_01987.t1 | 1 | 1 | An_peroxidase | 41 | 279 | 3.6e-34 | 118.0 | 1.0e-37 | 1.5e-33 | 115.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5434.1_01987.t1 | gi|293601669|gb|ACP28169.2| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5434.1_01987.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5434.1_01987.t1 atgaagaggataaagctatggctgaaaccggcaccttctaccttgcattcactcatggtcaataataagtggttatggaa catagtgaacaatataggctttctacgggagtacgtcatgaagaaggttcttacaagtgaaacaatcaaggtagtcatag aagattacgttcagcacctaagtaattataactacaagctcgtgttcaaaccggacttgttatttggggaactgttccag taccagaacaggatagctctggagttcaaccatctgtatcattggcatccactgatgcctgacgagtttaacatcaacgg taccaagtacaatttgaaggagttcctgtaccacccagaggtggtggtaaaacacgggatgagggagtttgtagactcac tatctaagcagagggctggagcttttggtccatacaaccatggtccatttacaatccccgtggtcagggacttgataagt catggacgtaaactgagactccaacccttcaataactacaggaaaaaatttaacatgaagccagtcaaaacctttgaaga acttacaggtgaaaagaagctatccaaaatactccaaaatttttacggtgacataaatgcggtagaattttacgttggac tcatagcccaaaagagaagagaaaaggccatgtttggcgagaccctggtagagataggagcaccttattcactgaagggg ctgatgaccaaccccatatgtagccccaaatactggaaaccatccacgtttggaggggatgtgggatttgacatagttaa tacagccagtctggagaagttattctgtgaaaacattaaaggggactgtcccgtagtgtcgtttcaggtgccagacttta aggaaggcgatgttgatgaatttttacgacaaaaaacagagttatag |
|
Protein
| Protein ID | pfu_aug1.0_5434.1_01987.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5434.1_01987.t1 MKRIKLWLKPAPSTLHSLMVNNKWLWNIVNNIGFLREYVMKKVLTSETIKVVIEDYVQHLSNYNYKLVFKPDLLFGELFQ YQNRIALEFNHLYHWHPLMPDEFNINGTKYNLKEFLYHPEVVVKHGMREFVDSLSKQRAGAFGPYNHGPFTIPVVRDLIS HGRKLRLQPFNNYRKKFNMKPVKTFEELTGEKKLSKILQNFYGDINAVEFYVGLIAQKRREKAMFGETLVEIGAPYSLKG LMTNPICSPKYWKPSTFGGDVGFDIVNTASLEKLFCENIKGDCPVVSFQVPDFKEGDVDEFLRQKTEL |
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