Gene
Gene Model ID | pfu_aug1.0_5434.1_01987 |
---|---|
Locus | scaffold5434.1 : 4926 ... 13072 : + |
To GenomeBrowser | scaffold5434.1:4926..13072 |
Genes list of scaffold | scaffold5434.1 |
Synonym | pfu_aug2.0_364.1_14055 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | cyclooxygenase |
Description | Best hit to AY004222 (coral).338 bits, 7e-91 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5434.1_01987.t1 | 1 | 1 | An_peroxidase | 41 | 279 | 3.6e-34 | 118.0 | 1.0e-37 | 1.5e-33 | 115.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_5434.1_01987.t1 | gi|293601669|gb|ACP28169.2| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_5434.1_01987.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5434.1_01987.t1 atgaagaggataaagctatggctgaaaccggcaccttctaccttgcattcactcatggtcaataataagtggttatggaa catagtgaacaatataggctttctacgggagtacgtcatgaagaaggttcttacaagtgaaacaatcaaggtagtcatag aagattacgttcagcacctaagtaattataactacaagctcgtgttcaaaccggacttgttatttggggaactgttccag taccagaacaggatagctctggagttcaaccatctgtatcattggcatccactgatgcctgacgagtttaacatcaacgg taccaagtacaatttgaaggagttcctgtaccacccagaggtggtggtaaaacacgggatgagggagtttgtagactcac tatctaagcagagggctggagcttttggtccatacaaccatggtccatttacaatccccgtggtcagggacttgataagt catggacgtaaactgagactccaacccttcaataactacaggaaaaaatttaacatgaagccagtcaaaacctttgaaga acttacaggtgaaaagaagctatccaaaatactccaaaatttttacggtgacataaatgcggtagaattttacgttggac tcatagcccaaaagagaagagaaaaggccatgtttggcgagaccctggtagagataggagcaccttattcactgaagggg ctgatgaccaaccccatatgtagccccaaatactggaaaccatccacgtttggaggggatgtgggatttgacatagttaa tacagccagtctggagaagttattctgtgaaaacattaaaggggactgtcccgtagtgtcgtttcaggtgccagacttta aggaaggcgatgttgatgaatttttacgacaaaaaacagagttatag |
Protein
Protein ID | pfu_aug1.0_5434.1_01987.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5434.1_01987.t1 MKRIKLWLKPAPSTLHSLMVNNKWLWNIVNNIGFLREYVMKKVLTSETIKVVIEDYVQHLSNYNYKLVFKPDLLFGELFQ YQNRIALEFNHLYHWHPLMPDEFNINGTKYNLKEFLYHPEVVVKHGMREFVDSLSKQRAGAFGPYNHGPFTIPVVRDLIS HGRKLRLQPFNNYRKKFNMKPVKTFEELTGEKKLSKILQNFYGDINAVEFYVGLIAQKRREKAMFGETLVEIGAPYSLKG LMTNPICSPKYWKPSTFGGDVGFDIVNTASLEKLFCENIKGDCPVVSFQVPDFKEGDVDEFLRQKTEL |