Gene
| Gene Model ID | pfu_aug1.0_5436.1_01993 |
|---|---|
| Locus | scaffold5436.1 : 45263 ... 54985 : - |
| To GenomeBrowser | scaffold5436.1:45263..54985 |
| Genes list of scaffold | scaffold5436.1 |
| Synonym | pfu_aug2.0_715.1_17753 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5436.1_01993.t1 | 1 | 1 | S4 | 47 | 93 | 4.4e-07 | 29.2 | 2.3e-10 | 1.1e-06 | 27.9 |
| pfu_aug1.0_5436.1_01993.t1 | 1 | 1 | Ribosomal_S4e | 97 | 172 | 4.4e-31 | 106.3 | 2.0e-34 | 9.7e-31 | 105.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5436.1_01993.t1 | gi|22758868|gb|AAN05593.1| | ribosomal protein S4 [Argopecten irradians] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 3 |
| maleGonad | 2 |
| mantle | 2 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5436.1_01993.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5436.1_01993.t1 atgaaaagcaaagatgtactttcttcatacataaaaatgcgcatcaacgtgatgtttgcttcactcattctaaatggacc tatatttctcgctccaaagcccagcactggtccccacaaatccagggaatctctgccactgattctcttcctgaggaaca gactaaagtacgctttgacatatgatgaagttaccaaaattgtgatgcagagattaataaaggttgacggaaaagtcagg actgacaaaacctacccagctggttttatggatgttatcactattgaaaagacagcagaaaacttccgactcttgtacga cgttaaaggcagattcacaatccacaggattaagcccgaggaagctaaatacaaattatgccgcgtgaggaaagtagcat gtgggccaaaaggagttccctatatcacaacacatgatgccagaaccatcagatatcctgatcctctagtaaaggtcaat gacaccatcatggttgacattgcctcaggaaaaatcaaggatttcatcaagtttgattcagacaatctttcccaacgtgt actgatgcatcagcatattttctgtaaacttttaagagaaaaggaacatcatttgacacttgaatttattgagttacgtt tttgtgatcggaaaaggaaacaaaccatggatctccctaccacgtggaaaaggagttaa |
|
Protein
| Protein ID | pfu_aug1.0_5436.1_01993.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5436.1_01993.t1 MKSKDVLSSYIKMRINVMFASLILNGPIFLAPKPSTGPHKSRESLPLILFLRNRLKYALTYDEVTKIVMQRLIKVDGKVR TDKTYPAGFMDVITIEKTAENFRLLYDVKGRFTIHRIKPEEAKYKLCRVRKVACGPKGVPYITTHDARTIRYPDPLVKVN DTIMVDIASGKIKDFIKFDSDNLSQRVLMHQHIFCKLLREKEHHLTLEFIELRFCDRKRKQTMDLPTTWKRS |
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