Gene
| Gene Model ID | pfu_aug1.0_5438.1_16659 |
|---|---|
| Locus | scaffold5438.1 : 12196 ... 33472 : + |
| To GenomeBrowser | scaffold5438.1:12196..33472 |
| Genes list of scaffold | scaffold5438.1 |
| Synonym | pfu_aug2.0_794.1_14559 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5438.1_16659.t1 | 1 | 1 | Lig_chan-Glu_bd | 207 | 260 | 8.9e-13 | 48.0 | 4.9e-16 | 1.8e-12 | 47.0 |
| pfu_aug1.0_5438.1_16659.t1 | 1 | 1 | SBP_bac_3 | 212 | 542 | 1.3e-19 | 70.3 | 3.0e-22 | 1.1e-18 | 67.3 |
| pfu_aug1.0_5438.1_16659.t1 | 1 | 1 | Lig_chan | 315 | 473 | 2.8026e-45 | 153.6 | 0.0 | 4.2039e-45 | 153.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5438.1_16659.t1 | gi|241086353|ref|XP_002409162.1| | glutamate receptor, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 3 |
| maleGonad | 1 |
| mantle | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5438.1_16659.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5438.1_16659.t1 atggagtcccgtcgtcacagtcagtcagagtgcaagtcccaaggatgcgctggtcttcaacgattcgaagaggtgtacag tacgttgcatcgggatccaacattaaatataagtgtggttccagttaagttagaggaagtcgattattctcacgagattt tgcgaagtttggatgtgatgtattacataggactgaaaacatttaccatcgacttgtcttctttagatgcatatagatca cttatgcgacagtgcaaagtcgataattcagaaaatcataaaccgaaggcatacaaaatcaggataaaacgggaaccaaa gcaaacaatcaaaataaataaccgaactccgaatatgggagtgagatcaggtgctcaggaagagtcagcatctcctgttt gcatgcaaaactcgtcgctttgcgaaatcctggctttacgaaatgttttagatagcgtaatgtttaatggactaacaggg cctgtttcatttgacgaaaaaggatacaggaaagattttgaacttctagtatcaactgtcggtattgatagacctcctca acaggagccaccgtatctgcaattgagagatccgaagaataaaggcacaaccgcaaattcccgaatactaaatggtgata aatacgaaggttttatattagactttgcagagaagattgcagaggaattgaacgtgaacttgaaattcagggaagtttcc gatgaaaactatggagaggaaatttcgaagggtatttggaatggaatggtcggagaacttaggaatggtactgctgatct agctatcgctccccttacaattacactggctagggaaaaggctattgacttcacaaaaccttttatggacgtcggaatct cgattatgatcaagaaaccggatatagaaaaacctggtgtattttctttcatgaaaccgttttctttgagtatatggatg tttatacttttggcatataccgccgttagtattgggctatttctggtgagcagatttagtccatatgaatggcggaaaat tcttagttcggctgggatttcgtatgaaaatgacttttccctgatcaattcgttttggttttctacaggagctttaatgt tacagggtagcgatgaatgtccaagatctatatcggggcggatcataggaacagtatggtggtttttcgttctcataatc atatcaacctatacggcgaatcttgcagcatttcttactgtagagaatatggtcgcccccatagaatcggctgatcagct agcagctcaggaccagattaaatatggctgccggaagtccggatcaactgagaaattctttgaggagaatcaggtgacga cttataggaacatgggtgcctacatgaagaataacccaagtgtaatggtagcaaccacgagggaaggcattgagagggtg cgtaactctaaaggaaaatatgcactcttgatagaatctactatgaacgaatatgaaaacagtagagagccttgtgatac tctgaaagtcggcagaaatctcaacgcagaaggagatagacttaatcttgctgtcctgatgctacatgaagatgggacgt tgttaagacttaaacggagatggtggcaggacaagagtcagtgtgcaccggaaggcactaagacttttaggactgtttcc atagaatttgatgacgtcataatcagtctacgtcagataccgtctcaaatgggaagtaactctggttttcgaaaatag |
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Protein
| Protein ID | pfu_aug1.0_5438.1_16659.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5438.1_16659.t1 MESRRHSQSECKSQGCAGLQRFEEVYSTLHRDPTLNISVVPVKLEEVDYSHEILRSLDVMYYIGLKTFTIDLSSLDAYRS LMRQCKVDNSENHKPKAYKIRIKREPKQTIKINNRTPNMGVRSGAQEESASPVCMQNSSLCEILALRNVLDSVMFNGLTG PVSFDEKGYRKDFELLVSTVGIDRPPQQEPPYLQLRDPKNKGTTANSRILNGDKYEGFILDFAEKIAEELNVNLKFREVS DENYGEEISKGIWNGMVGELRNGTADLAIAPLTITLAREKAIDFTKPFMDVGISIMIKKPDIEKPGVFSFMKPFSLSIWM FILLAYTAVSIGLFLVSRFSPYEWRKILSSAGISYENDFSLINSFWFSTGALMLQGSDECPRSISGRIIGTVWWFFVLII ISTYTANLAAFLTVENMVAPIESADQLAAQDQIKYGCRKSGSTEKFFEENQVTTYRNMGAYMKNNPSVMVATTREGIERV RNSKGKYALLIESTMNEYENSREPCDTLKVGRNLNAEGDRLNLAVLMLHEDGTLLRLKRRWWQDKSQCAPEGTKTFRTVS IEFDDVIISLRQIPSQMGSNSGFRK |
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