Gene
| Gene Model ID | pfu_aug1.0_5465.1_52546 |
|---|---|
| Locus | scaffold5465.1 : 11296 ... 14281 : + |
| To GenomeBrowser | scaffold5465.1:11296..14281 |
| Genes list of scaffold | scaffold5465.1 |
| Synonym | pfu_aug2.0_1331.1_04971 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5465.1_52546.t1 | 1 | 1 | 2-Hacid_dh | 1 | 245 | 9.4e-17 | 60.7 | 4.5e-20 | 1.1e-16 | 60.5 |
| pfu_aug1.0_5465.1_52546.t1 | 1 | 1 | 2-Hacid_dh_C | 36 | 214 | 0.0 | 192.5 | 0.0 | 0.0 | 192.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5465.1_52546.t1 | gi|213515414|ref|NP_001135102.1| | glyoxylate reductase/hydroxypyruvate reductase [Salmo salar] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| 8-16cell | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5465.1_52546.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5465.1_52546.t1 atgtcagtgggctatgaccacattgatcttgctgaatgtaagaagcgtgggatatctgtgggcttcactccggacgtact gaccaacgctgtggccgaactgaccatggctttattactggccacatcacgcaggctcaaggaaggtatgaatgcagtaa ttcaaggtaaatggggaacttggaatccaatatggctcctgggaagtggtctagatggcgccactgtgggagtagttgga ctcgggagaattggatttgaggttgttaaaaggcttcatccatttggagtggctaaagttctatattcagatgtggagcc gaaatcctatgctaaagacataaatgcagagtatgcgactttggacgatcttttgaagatgtccgattttgtactcggtt gttgcgcattaaccaaggaaaatatgggacttttcaacaaagatgctttcagtaaaatgaaaaatactgcaatttttgtc aacacaagtagagggggtcttgtcaaccagaatgatctatacacggctttatcaaccaatcagattgcaggggcggggct tgatgtgaccaatcctgagccattacccacagatagtcctctacttaaacttgagaactgcattgttttacctcatattg caagcgccacaatcaaatcacgaagtgcgatgtctgaacttacaggacaaaacatcctagcttgtttaaacggaaagaaa atgcctgcacaagtggttgtgtaa |
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Protein
| Protein ID | pfu_aug1.0_5465.1_52546.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5465.1_52546.t1 MSVGYDHIDLAECKKRGISVGFTPDVLTNAVAELTMALLLATSRRLKEGMNAVIQGKWGTWNPIWLLGSGLDGATVGVVG LGRIGFEVVKRLHPFGVAKVLYSDVEPKSYAKDINAEYATLDDLLKMSDFVLGCCALTKENMGLFNKDAFSKMKNTAIFV NTSRGGLVNQNDLYTALSTNQIAGAGLDVTNPEPLPTDSPLLKLENCIVLPHIASATIKSRSAMSELTGQNILACLNGKK MPAQVVV |
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