Gene
| Gene Model ID | pfu_aug1.0_547.1_00384 |
|---|---|
| Locus | scaffold547.1 : 98986 ... 127325 : - |
| To GenomeBrowser | scaffold547.1:98986..127325 |
| Genes list of scaffold | scaffold547.1 |
| Synonym | pfu_aug2.0_360.1_00653 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_547.1_00384.t1 | 1 | 1 | Proteasome_A_N | 8 | 30 | 2.4e-14 | 52.2 | 9.2e-18 | 4.6e-14 | 51.4 |
| pfu_aug1.0_547.1_00384.t1 | 1 | 1 | Proteasome | 31 | 85 | 1.6e-14 | 53.5 | 5.5e-18 | 2.7e-14 | 52.8 |
| pfu_aug1.0_547.1_00384.t1 | 2 | 1 | Fasciclin | 92 | 179 | 0.0 | 173.9 | 2.2e-24 | 1.1e-20 | 73.9 |
| pfu_aug1.0_547.1_00384.t1 | 2 | 2 | Fasciclin | 186 | 281 | 0.0 | 173.9 | 8.1e-32 | 4.0e-28 | 97.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_547.1_00384.t1 | gi|15220961|ref|NP_175788.1| | proteasome subunit alpha type-5-A [Arabidopsis thaliana] | 3.0e-34 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_547.1_00384.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_547.1_00384.t1 atgtttctcacaagatctgagtatgacagaggtgtcaacacattctctccagaaggaagattgttccaagtggaatatgc tattgaagctataaagttgggctccactgccataggtatccaaacaaatgaaggagttgtattggcagtggaaaaaagag ttacctcccctcttattgagcctgccagcatcgaaaaaatatttgaagtagatgatcatatagcattttgtcaaacaggc aatattcttgatgtggcaaggcagttgggggcgaccactttacttgaactggtcaacgatgctggaataacggacgtcct aaccgttggagatcctctcaccctttttgctccatcaaacgaggcattcagtaatcttccagcgagcattcttaacgagc tgaaagacgacaaacaactgctagccgatgtcttgaagtatcacgtactgaatggtagagtatctatcagcatgcttgcc aatgagctggttgtgccaactctactggatggttctacaagcagagtaaacatttaccaaggtcctgttcctagaccact gacactgtttgcgcccactgacgacgcttttaatgctctaccaccaggaacactcgacgcactccttaaagacaaaacag ctcttatagatttattgacttaccatgcggtcaatggaacttattacagcatcggtttgacaaatgggacttatccgact gtagagggaaaatctgtcactattgctgtcgatactgacggtattacagtgaacgatgctaaagtaaccactgccgatgt cccaggaactaacggcgtccttcacgtcattgacaaagtcctaacgttgccgagctcattcaggattcaatag |
|
Protein
| Protein ID | pfu_aug1.0_547.1_00384.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_547.1_00384.t1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTNEGVVLAVEKRVTSPLIEPASIEKIFEVDDHIAFCQTG NILDVARQLGATTLLELVNDAGITDVLTVGDPLTLFAPSNEAFSNLPASILNELKDDKQLLADVLKYHVLNGRVSISMLA NELVVPTLLDGSTSRVNIYQGPVPRPLTLFAPTDDAFNALPPGTLDALLKDKTALIDLLTYHAVNGTYYSIGLTNGTYPT VEGKSVTIAVDTDGITVNDAKVTTADVPGTNGVLHVIDKVLTLPSSFRIQ |
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